Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:58346366-59726383

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208 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbc1d21 9 58359704 to 58370455 10751 - protein coding gene TBC1 domain family, member 21
D9Mit232 9 58362532 to 58362688 156 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232
D9Mit248 9 58362559 to 58362688 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 248
D9Mit232.1 9 58362651 to 58362834 183 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 232.1
Tssr89904 9 58370378 to 58370382 4 - TSS region transcription start site region 89904
Tssr89905 9 58370409 to 58370438 29 - TSS region transcription start site region 89905
Tssr89906 9 58370439 to 58370450 11 - TSS region transcription start site region 89906
Tssr89907 9 58370451 to 58370458 7 - TSS region transcription start site region 89907
Tssr89908 9 58370462 to 58370474 12 - TSS region transcription start site region 89908
1700072B07Rik 9 58370504 to 58374183 3679 + lincRNA gene RIKEN cDNA 1700072B07 gene
Tssr85387 9 58370549 to 58370565 16 + TSS region transcription start site region 85387
Tssr85388 9 58435835 to 58435838 3 + TSS region transcription start site region 85388
Tssr89909 9 58454816 to 58454846 30 - TSS region transcription start site region 89909
Tssr85389 9 58455096 to 58455113 17 + TSS region transcription start site region 85389
Tssr85390 9 58455156 to 58455185 29 + TSS region transcription start site region 85390
4930461G14Rik 9 58455173 to 58469623 14450 + lincRNA gene RIKEN cDNA 4930461G14 gene
Gm32820 9 58457223 to 58463835 6612 - lncRNA gene predicted gene, 32820
Tssr89910 9 58462819 to 58462826 7 - TSS region transcription start site region 89910
Gm32768 9 58464357 to 58473615 9258 - lncRNA gene predicted gene, 32768
Elads3 9 58470677 to 58470677 0 QTL ENU induced lung adenoma susceptibility 3
Cpgi21847 9 58487759 to 58489402 1643 CpG island CpG island 21847
Tssr85391 9 58488083 to 58488110 27 + TSS region transcription start site region 85391
Tssr85392 9 58488116 to 58488132 16 + TSS region transcription start site region 85392
Tssr85393 9 58488134 to 58488161 27 + TSS region transcription start site region 85393
Tssr85394 9 58488173 to 58488176 3 + TSS region transcription start site region 85394
Tssr85395 9 58488568 to 58488578 10 + TSS region transcription start site region 85395
Insyn1 9 58488603 to 58499742 11139 + protein coding gene inhibitory synaptic factor 1
Tssr85396 9 58489035 to 58489039 4 + TSS region transcription start site region 85396
Tssr85397 9 58489817 to 58489834 17 + TSS region transcription start site region 85397
Cpgi21848 9 58490113 to 58490318 205 CpG island CpG island 21848
Cd276 9 58524300 to 58555033 30733 - protein coding gene CD276 antigen
Tssr89911 9 58526171 to 58526185 14 - TSS region transcription start site region 89911
Cpgi21849 9 58537201 to 58537428 227 CpG island CpG island 21849
Cpgi21850 9 58554465 to 58555624 1159 CpG island CpG island 21850
Gm10657 9 58554799 to 58555829 1030 + protein coding gene predicted gene 10657
Tssr89912 9 58555081 to 58555127 46 - TSS region transcription start site region 89912
Tssr89913 9 58555129 to 58555143 14 - TSS region transcription start site region 89913
Tssr89914 9 58555187 to 58555217 30 - TSS region transcription start site region 89914
Tssr89915 9 58555219 to 58555246 27 - TSS region transcription start site region 89915
Tssr89916 9 58556139 to 58556155 16 - TSS region transcription start site region 89916
Cpgi21851 9 58581753 to 58583150 1397 CpG island CpG island 21851
Tssr89917 9 58582073 to 58582090 17 - TSS region transcription start site region 89917
Nptn 9 58582240 to 58652879 70639 + protein coding gene neuroplastin
Tssr85398 9 58582258 to 58582269 11 + TSS region transcription start site region 85398
Tssr85399 9 58582397 to 58582416 19 + TSS region transcription start site region 85399
Tssr85400 9 58599385 to 58599389 4 + TSS region transcription start site region 85400
Tssr85401 9 58603729 to 58603752 23 + TSS region transcription start site region 85401
Tssr85402 9 58607482 to 58607484 2 + TSS region transcription start site region 85402
Tssr85403 9 58611518 to 58611525 7 + TSS region transcription start site region 85403
Tssr85404 9 58614368 to 58614372 4 + TSS region transcription start site region 85404
Tssr85405 9 58618763 to 58618777 14 + TSS region transcription start site region 85405
Tssr85406 9 58629102 to 58629110 8 + TSS region transcription start site region 85406
Tssr85407 9 58629112 to 58629123 11 + TSS region transcription start site region 85407
Tssr85408 9 58629124 to 58629134 10 + TSS region transcription start site region 85408
Tssr85409 9 58640737 to 58640759 22 + TSS region transcription start site region 85409
D9Ertd167e 9 58646496 to 58646703 207 DNA segment DNA segment, Chr 9, ERATO Doi 167, expressed
Tssr85410 9 58652034 to 58652088 54 + TSS region transcription start site region 85410
Tssr85411 9 58652418 to 58652448 30 + TSS region transcription start site region 85411
Rec114 9 58652856 to 58741563 88707 - protein coding gene REC114 meiotic recombination protein
Tssr85412 9 58653117 to 58653153 36 + TSS region transcription start site region 85412
Tssr89918 9 58657823 to 58657878 55 - TSS region transcription start site region 89918
Tssr89919 9 58657887 to 58657898 11 - TSS region transcription start site region 89919
A130026P03Rik 9 58666664 to 58668843 2179 unclassified gene RIKEN cDNA A130026P03 gene
Gm20620 9 58695844 to 58696011 167 - pseudogene predicted gene 20620
Cpgi21852 9 58741396 to 58741680 284 CpG island CpG island 21852
Tssr89920 9 58741543 to 58741580 37 - TSS region transcription start site region 89920
Gm21183 9 58750745 to 58751269 524 - pseudogene predicted gene, 21183
Tssr85413 9 58803525 to 58803537 12 + TSS region transcription start site region 85413
Cpgi21853 9 58805996 to 58806248 252 CpG island CpG island 21853
Cpgi21854 9 58822051 to 58824609 2558 CpG island CpG island 21854
Tssr85414 9 58822848 to 58822862 14 + TSS region transcription start site region 85414
Tssr85415 9 58822939 to 58822966 27 + TSS region transcription start site region 85415
Hcn4 9 58823512 to 58860955 37443 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 4
Cpgi21855 9 58859006 to 58859559 553 CpG island CpG island 21855
Tssr89921 9 58869433 to 58869456 23 - TSS region transcription start site region 89921
Neo1 9 58874687 to 59036441 161754 - protein coding gene neogenin
Lfhrvq1 9 58877035 to 68648726 9771691 QTL low frequency time index heart rate varaiblity, QTL 1
Tssr89922 9 58979135 to 58979148 13 - TSS region transcription start site region 89922
Gm47271 9 58979251 to 59033856 54605 + antisense lncRNA gene predicted gene, 47271
Cpgi21856 9 59035415 to 59037364 1949 CpG island CpG island 21856
Tssr89923 9 59036202 to 59036221 19 - TSS region transcription start site region 89923
Tssr89924 9 59036235 to 59036244 9 - TSS region transcription start site region 89924
Tssr89925 9 59036280 to 59036293 13 - TSS region transcription start site region 89925
Tssr89926 9 59036323 to 59036344 21 - TSS region transcription start site region 89926
Tssr89927 9 59036366 to 59036383 17 - TSS region transcription start site region 89927
Tssr89928 9 59036387 to 59036460 73 - TSS region transcription start site region 89928
Tssr89929 9 59036872 to 59036885 13 - TSS region transcription start site region 89929
Tssr89930 9 59036941 to 59036955 14 - TSS region transcription start site region 89930
Gm38638 9 59040766 to 59041821 1055 - pseudogene predicted gene, 38638
Gm7589 9 59145677 to 59146210 533 - pseudogene predicted gene 7589
D9Mit335 9 59172505 to 59172629 124 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 335
Gm33053 9 59191410 to 59235071 43661 - lincRNA gene predicted gene, 33053
Gm39345 9 59257370 to 59259930 2560 - lncRNA gene predicted gene, 39345
Cpgi21857 9 59282505 to 59282690 185 CpG island CpG island 21857
Tssr89931 9 59284152 to 59284163 11 - TSS region transcription start site region 89931
Tssr89932 9 59284178 to 59284189 11 - TSS region transcription start site region 89932
Tssr89933 9 59284199 to 59284207 8 - TSS region transcription start site region 89933
Tssr85416 9 59288327 to 59288340 13 + TSS region transcription start site region 85416
Tssr85417 9 59288843 to 59288844 1 + TSS region transcription start site region 85417
Cpgi21858 9 59290989 to 59292241 1252 CpG island CpG island 21858
Tssr89934 9 59291370 to 59291384 14 - TSS region transcription start site region 89934
Tssr2890 9 59291397 to 59291412 15 - TSS region transcription start site region 2890
Adpgk 9 59291545 to 59316200 24655 + protein coding gene ADP-dependent glucokinase
Tssr85418 9 59291548 to 59291555 7 + TSS region transcription start site region 85418
Tssr85419 9 59291565 to 59291577 12 + TSS region transcription start site region 85419
Tssr85420 9 59291580 to 59291613 33 + TSS region transcription start site region 85420
Tssr85421 9 59291617 to 59291628 11 + TSS region transcription start site region 85421
Tssr85422 9 59292598 to 59292602 4 + TSS region transcription start site region 85422
Tssr85423 9 59311781 to 59311791 10 + TSS region transcription start site region 85423
Tssr85424 9 59315160 to 59315173 13 + TSS region transcription start site region 85424
Bbs4 9 59321990 to 59353508 31518 - protein coding gene Bardet-Biedl syndrome 4 (human)
Tssr89935 9 59330150 to 59330153 3 - TSS region transcription start site region 89935
Cpgi21859 9 59353176 to 59353693 517 CpG island CpG island 21859
Tssr89936 9 59353430 to 59353465 35 - TSS region transcription start site region 89936
Tssr2891 9 59355872 to 59355873 1 + TSS region transcription start site region 2891
Arih1 9 59388554 to 59486659 98105 - protein coding gene ariadne RBR E3 ubiquitin protein ligase 1
Tssr89937 9 59391544 to 59391561 17 - TSS region transcription start site region 89937
Tssr89938 9 59393195 to 59393218 23 - TSS region transcription start site region 89938
Tssr89939 9 59404476 to 59404482 6 - TSS region transcription start site region 89939
Tssr89940 9 59410627 to 59410632 5 - TSS region transcription start site region 89940
D9Mit102 9 59423325 to 59423466 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 102
D9Ertd815e 9 59425689 to 59425927 238 DNA segment DNA segment, Chr 9, ERATO Doi 815, expressed
Tssr89941 9 59465090 to 59465106 16 - TSS region transcription start site region 89941
Tssr89942 9 59469114 to 59469118 4 - TSS region transcription start site region 89942
Rps11-ps1 9 59471759 to 59472233 474 - pseudogene ribosomal protein S11, pseudogene 1
Tssr89943 9 59472247 to 59472257 10 - TSS region transcription start site region 89943
Gm20199 9 59477745 to 59481741 3996 - lncRNA gene predicted gene, 20199
Cpgi21860 9 59485674 to 59487169 1495 CpG island CpG island 21860
Tssr89944 9 59486323 to 59486415 92 - TSS region transcription start site region 89944
Tssr89945 9 59486437 to 59486480 43 - TSS region transcription start site region 89945
Tssr89946 9 59486581 to 59486590 9 - TSS region transcription start site region 89946
Tssr89947 9 59486596 to 59486601 5 - TSS region transcription start site region 89947
Tssr89948 9 59486610 to 59486621 11 - TSS region transcription start site region 89948
Tssr89949 9 59486647 to 59486679 32 - TSS region transcription start site region 89949
Tssr85425 9 59486745 to 59486767 22 + TSS region transcription start site region 85425
Gm33180 9 59499361 to 59512865 13504 - lincRNA gene predicted gene, 33180
Tmem202 9 59518671 to 59539674 21003 - protein coding gene transmembrane protein 202
Tssr89950 9 59525446 to 59525476 30 - TSS region transcription start site region 89950
Tssr89951 9 59530236 to 59530240 4 - TSS region transcription start site region 89951
Cpgi21861 9 59539401 to 59540168 767 CpG island CpG island 21861
Hexa 9 59539545 to 59565109 25564 + protein coding gene hexosaminidase A
Tssr85426 9 59539643 to 59539717 74 + TSS region transcription start site region 85426
Tssr89952 9 59539919 to 59539988 69 - TSS region transcription start site region 89952
Tssr89953 9 59539989 to 59540005 16 - TSS region transcription start site region 89953
Tssr85427 9 59540925 to 59540955 30 + TSS region transcription start site region 85427
Tssr85428 9 59541834 to 59541860 26 + TSS region transcription start site region 85428
Tssr89954 9 59542607 to 59542627 20 - TSS region transcription start site region 89954
Tssr85429 9 59542772 to 59542804 32 + TSS region transcription start site region 85429
Tssr85430 9 59542821 to 59542832 11 + TSS region transcription start site region 85430
Tssr85431 9 59543002 to 59543014 12 + TSS region transcription start site region 85431
Tssr89955 9 59544593 to 59544607 14 - TSS region transcription start site region 89955
Tssr85432 9 59544828 to 59544835 7 + TSS region transcription start site region 85432
Tssr85433 9 59554160 to 59554190 30 + TSS region transcription start site region 85433
Tssr85434 9 59557335 to 59557367 32 + TSS region transcription start site region 85434
Tssr85435 9 59558068 to 59558097 29 + TSS region transcription start site region 85435
Tssr85436 9 59558102 to 59558112 10 + TSS region transcription start site region 85436
Tssr85437 9 59559369 to 59559383 14 + TSS region transcription start site region 85437
Tssr85438 9 59561021 to 59561035 14 + TSS region transcription start site region 85438
Tssr85439 9 59561978 to 59561995 17 + TSS region transcription start site region 85439
Tssr89956 9 59563917 to 59563957 40 - TSS region transcription start site region 89956
Tssr85440 9 59564859 to 59564879 20 + TSS region transcription start site region 85440
Tssr89957 9 59565096 to 59565108 12 - TSS region transcription start site region 89957
Tssr85441 9 59566506 to 59566508 2 + TSS region transcription start site region 85441
Cpgi21862 9 59577719 to 59578880 1161 CpG island CpG island 21862
Celf6 9 59577917 to 59607292 29375 + protein coding gene CUGBP, Elav-like family member 6
Tssr85442 9 59578294 to 59578323 29 + TSS region transcription start site region 85442
Tssr85443 9 59585785 to 59585795 10 + TSS region transcription start site region 85443
Tssr85444 9 59589330 to 59589353 23 + TSS region transcription start site region 85444
Cpgi21863 9 59602849 to 59603663 814 CpG island CpG island 21863
Cpgi21864 9 59616957 to 59617977 1020 CpG island CpG island 21864
Tssr89958 9 59617088 to 59617136 48 - TSS region transcription start site region 89958
Tssr85445 9 59617238 to 59617282 44 + TSS region transcription start site region 85445
Parp6 9 59617284 to 59650285 33001 + protein coding gene poly (ADP-ribose) polymerase family, member 6
Tssr85446 9 59617284 to 59617301 17 + TSS region transcription start site region 85446
Tssr85447 9 59617302 to 59617378 76 + TSS region transcription start site region 85447
Tssr85448 9 59618268 to 59618272 4 + TSS region transcription start site region 85448
Tssr85449 9 59653601 to 59653624 23 + TSS region transcription start site region 85449
Cpgi21865 9 59655854 to 59657657 1803 CpG island CpG island 21865
Tssr85450 9 59656172 to 59656175 3 + TSS region transcription start site region 85450
Pkm 9 59656368 to 59679375 23007 + protein coding gene pyruvate kinase, muscle
Tssr85451 9 59656548 to 59656584 36 + TSS region transcription start site region 85451
Tssr85452 9 59656591 to 59656599 8 + TSS region transcription start site region 85452
Tssr85453 9 59656763 to 59656855 92 + TSS region transcription start site region 85453
Tssr85454 9 59657104 to 59657122 18 + TSS region transcription start site region 85454
Tssr85455 9 59657200 to 59657252 52 + TSS region transcription start site region 85455
Tssr85456 9 59657524 to 59657581 57 + TSS region transcription start site region 85456
Tssr85457 9 59657615 to 59657631 16 + TSS region transcription start site region 85457
Tssr85458 9 59658460 to 59658489 29 + TSS region transcription start site region 85458
Tssr85459 9 59659603 to 59659609 6 + TSS region transcription start site region 85459
1700043A12Rik 9 59660383 to 59661159 776 unclassified gene RIKEN cDNA 1700043A12 gene
Tssr85460 9 59661460 to 59661512 52 + TSS region transcription start site region 85460
Tssr89959 9 59664344 to 59664357 13 - TSS region transcription start site region 89959
Tssr85461 9 59665157 to 59665194 37 + TSS region transcription start site region 85461
Tssr85462 9 59665305 to 59665329 24 + TSS region transcription start site region 85462
Tssr85463 9 59668904 to 59668921 17 + TSS region transcription start site region 85463
Gm49759 9 59672814 to 59676700 3886 + unclassified gene predicted gene, 49759
Tssr85464 9 59676906 to 59676929 23 + TSS region transcription start site region 85464
Tssr85465 9 59677071 to 59677086 15 + TSS region transcription start site region 85465
Tssr85466 9 59679829 to 59679845 16 + TSS region transcription start site region 85466
Cpgi21866 9 59679838 to 59680786 948 CpG island CpG island 21866