Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:48521179-49151200

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D9Mit331 9 48576188 to 48576284 96 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 331
Nnmt 9 48591877 to 48605153 13276 - protein coding gene nicotinamide N-methyltransferase
Tssr89397 9 48597441 to 48597446 5 - TSS region transcription start site region 89397
Tssr89398 9 48604979 to 48605000 21 - TSS region transcription start site region 89398
Tssr89399 9 48605007 to 48605018 11 - TSS region transcription start site region 89399
Tssr89400 9 48605073 to 48605084 11 - TSS region transcription start site region 89400
Tssr89401 9 48605085 to 48605100 15 - TSS region transcription start site region 89401
Tssr89402 9 48605104 to 48605116 12 - TSS region transcription start site region 89402
Tssr89403 9 48605120 to 48605133 13 - TSS region transcription start site region 89403
Tssr89404 9 48605147 to 48605158 11 - TSS region transcription start site region 89404
Tssr89405 9 48649605 to 48649624 19 - TSS region transcription start site region 89405
Tssr89406 9 48652473 to 48652490 17 - TSS region transcription start site region 89406
Zbtb16 9 48654297 to 48836222 181925 - protein coding gene zinc finger and BTB domain containing 16
Tssr89407 9 48655806 to 48655813 7 - TSS region transcription start site region 89407
Tssr89408 9 48656508 to 48656522 14 - TSS region transcription start site region 89408
Gm32280 9 48665954 to 48677241 11287 + lncRNA gene predicted gene, 32280
Tssr84995 9 48670448 to 48670497 49 + TSS region transcription start site region 84995
Tssr2863 9 48708776 to 48708777 1 + TSS region transcription start site region 2863
Tssr89409 9 48738975 to 48738995 20 - TSS region transcription start site region 89409
Tssr89410 9 48740701 to 48740704 3 - TSS region transcription start site region 89410
Adip20b 9 48789608 to 53884418 5094810 QTL adiposity 20b
Tssr89411 9 48793965 to 48793969 4 - TSS region transcription start site region 89411
Tssr84996 9 48798330 to 48798335 5 + TSS region transcription start site region 84996
Tssr89412 9 48799664 to 48799669 5 - TSS region transcription start site region 89412
Tssr89413 9 48808216 to 48808225 9 - TSS region transcription start site region 89413
Tssr84997 9 48817577 to 48817582 5 + TSS region transcription start site region 84997
Tssr89414 9 48822098 to 48822101 3 - TSS region transcription start site region 89414
Cpgi21717 9 48834521 to 48836680 2159 CpG island CpG island 21717
Tssr89415 9 48835908 to 48835922 14 - TSS region transcription start site region 89415
Tssr89416 9 48835932 to 48835962 30 - TSS region transcription start site region 89416
Tssr89417 9 48836179 to 48836200 21 - TSS region transcription start site region 89417
Tssr89418 9 48836201 to 48836259 58 - TSS region transcription start site region 89418
Tssr89419 9 48836324 to 48836357 33 - TSS region transcription start site region 89419
Cpgi21718 9 48896317 to 48896500 183 CpG island CpG island 21718
Gm32335 9 48896451 to 48905982 9531 + antisense lncRNA gene predicted gene, 32335
Htr3a 9 48899213 to 48911099 11886 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 3A
Tssr89420 9 48910920 to 48910946 26 - TSS region transcription start site region 89420
Tssr89421 9 48911067 to 48911078 11 - TSS region transcription start site region 89421
Tssr89422 9 48911120 to 48911140 20 - TSS region transcription start site region 89422
Htr3b 9 48935008 to 48964990 29982 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 3B
Cpgi21719 9 48984777 to 48985990 1213 CpG island CpG island 21719
Tssr84998 9 48985358 to 48985451 93 + TSS region transcription start site region 84998
Usp28 9 48985375 to 49042517 57142 + protein coding gene ubiquitin specific peptidase 28
Tssr84999 9 48985467 to 48985478 11 + TSS region transcription start site region 84999
Tssr85000 9 48987428 to 48987436 8 + TSS region transcription start site region 85000
Tssr85001 9 48991987 to 48992005 18 + TSS region transcription start site region 85001
Tssr85002 9 49002585 to 49002588 3 + TSS region transcription start site region 85002
Tssr85003 9 49028128 to 49028140 12 + TSS region transcription start site region 85003
Tssr85004 9 49030876 to 49030883 7 + TSS region transcription start site region 85004
Tssr85005 9 49037281 to 49037283 2 + TSS region transcription start site region 85005
Cldn25-ps 9 49047676 to 49048267 591 - pseudogene claudin 25, pseudogene
1700042D02Rik 9 49051335 to 49055465 4130 - lincRNA gene RIKEN cDNA 1700042D02 gene
Cpgi21720 9 49055441 to 49056112 671 CpG island CpG island 21720
Tssr89423 9 49055486 to 49055497 11 - TSS region transcription start site region 89423
Tssr85006 9 49055574 to 49055629 55 + TSS region transcription start site region 85006
Zw10 9 49055613 to 49078775 23162 + protein coding gene zw10 kinetochore protein
Tssr85007 9 49055635 to 49055682 47 + TSS region transcription start site region 85007
Tssr89424 9 49079358 to 49079378 20 - TSS region transcription start site region 89424
Tmprss5 9 49081260 to 49117587 36327 + protein coding gene transmembrane protease, serine 5 (spinesin)
D9Mit99 9 49095649 to 49095834 185 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 99
Tssr85008 9 49102720 to 49102752 32 + TSS region transcription start site region 85008
Tssr85009 9 49108662 to 49108665 3 + TSS region transcription start site region 85009
Tssr89425 9 49148127 to 49148141 14 - TSS region transcription start site region 89425