Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:46268619-47558632

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ebao1 9 39724362 to 46528572 6804210 QTL epidermolysis bullosa acquisita onset 1
Tssr84899 9 46268601 to 46268619 18 + TSS region transcription start site region 84899
Apoa5 9 46268633 to 46271919 3286 + protein coding gene apolipoprotein A-V
Tssr84900 9 46268689 to 46268703 14 + TSS region transcription start site region 84900
Tssr84901 9 46268707 to 46268727 20 + TSS region transcription start site region 84901
Tssr84902 9 46268749 to 46268755 6 + TSS region transcription start site region 84902
Tssr84903 9 46269069 to 46269084 15 + TSS region transcription start site region 84903
Tssr84904 9 46269908 to 46269923 15 + TSS region transcription start site region 84904
Cpgi21702 9 46269978 to 46270488 510 CpG island CpG island 21702
Gm47544 9 46270035 to 46271365 1330 - antisense lncRNA gene predicted gene, 47544
Tssr84905 9 46270168 to 46270179 11 + TSS region transcription start site region 84905
Tssr84906 9 46270264 to 46270278 14 + TSS region transcription start site region 84906
Tssr84907 9 46270308 to 46270332 24 + TSS region transcription start site region 84907
Tssr84908 9 46270552 to 46270573 21 + TSS region transcription start site region 84908
Cpgi21703 9 46273014 to 46273708 694 CpG island CpG island 21703
Zpr1 9 46273064 to 46282643 9579 + protein coding gene ZPR1 zinc finger
Tssr84909 9 46273148 to 46273201 53 + TSS region transcription start site region 84909
Tssr84910 9 46280672 to 46280676 4 + TSS region transcription start site region 84910
Cpgi21704 9 46282728 to 46283397 669 CpG island CpG island 21704
Tssr84911 9 46282997 to 46283024 27 + TSS region transcription start site region 84911
Bud13 9 46283008 to 46299110 16102 + protein coding gene BUD13 homolog
Tssr84912 9 46292055 to 46292099 44 + TSS region transcription start site region 84912
Tssr89357 9 46303075 to 46303089 14 - TSS region transcription start site region 89357
4931429L15Rik 9 46303361 to 46319986 16625 - protein coding gene RIKEN cDNA 4931429L15 gene
Tssr89358 9 46315900 to 46315901 1 - TSS region transcription start site region 89358
Tssr89359 9 46315904 to 46315914 10 - TSS region transcription start site region 89359
Tssr89360 9 46315921 to 46315948 27 - TSS region transcription start site region 89360
Tssr89361 9 46315950 to 46315965 15 - TSS region transcription start site region 89361
Gm39329 9 46319038 to 46331798 12760 + antisense lncRNA gene predicted gene, 39329
Tssr89362 9 46319984 to 46319990 6 - TSS region transcription start site region 89362
4930448E22Rik 9 46326393 to 46329527 3134 - lncRNA gene RIKEN cDNA 4930448E22 gene
Cpgi21705 9 46328643 to 46329150 507 CpG island CpG island 21705
Tssr89363 9 46328880 to 46328912 32 - TSS region transcription start site region 89363
Tssr89364 9 46328937 to 46328961 24 - TSS region transcription start site region 89364
Cpgi21706 9 46330273 to 46330593 320 CpG island CpG island 21706
Cpgi21707 9 46334588 to 46335056 468 CpG island CpG island 21707
Gm31374 9 46349688 to 46352040 2352 + lincRNA gene predicted gene, 31374
Cpgi21708 9 46352483 to 46352657 174 CpG island CpG island 21708
Chol11 9 46381631 to 46381774 143 QTL cholesterol 11
D9Mit1003 9 46381631 to 46381774 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1003
Hdlq89 9 46381631 to 46381774 143 QTL HDL QTL 89
Cpgi21709 9 46392990 to 46393284 294 CpG island CpG island 21709
Gm47141 9 46397362 to 46398943 1581 + lincRNA gene predicted gene, 47141
Tssr89365 9 46416164 to 46416172 8 - TSS region transcription start site region 89365
Cpgi21710 9 46443220 to 46444070 850 CpG island CpG island 21710
Tssr84913 9 46480349 to 46480359 10 + TSS region transcription start site region 84913
Gm47144 9 46486104 to 46505073 18969 - lincRNA gene predicted gene, 47144
Gm31432 9 46532757 to 46543376 10619 + lincRNA gene predicted gene, 31432
Gm22659 9 46562974 to 46563103 129 + snoRNA gene predicted gene, 22659
Gm48945 9 46607255 to 46612726 5471 + lincRNA gene predicted gene, 48945
Tssr84914 9 46618758 to 46618762 4 + TSS region transcription start site region 84914
Gm22805 9 46630113 to 46630219 106 - snRNA gene predicted gene, 22805
Gm31557 9 46666273 to 46674844 8571 + lincRNA gene predicted gene, 31557
D9Mit191 9 46686373 to 46686518 145 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 191
Ntta3 9 46686373 to 65923895 19237522 QTL neurotensin transcript abundance 3
Gm8863 9 46713233 to 46714158 925 - pseudogene predicted gene 8863
Gm31614 9 46830358 to 46835945 5587 + lincRNA gene predicted gene, 31614
Gm39330 9 46839674 to 46844259 4585 + lncRNA gene predicted gene, 39330
Tssr84915 9 46913473 to 46913480 7 + TSS region transcription start site region 84915
Tssr84916 9 46913553 to 46913554 1 + TSS region transcription start site region 84916
Tssr84917 9 46913557 to 46913573 16 + TSS region transcription start site region 84917
Tssr84918 9 46913574 to 46913585 11 + TSS region transcription start site region 84918
Tssr84919 9 46913590 to 46913614 24 + TSS region transcription start site region 84919
2900052N01Rik 9 46913603 to 46927366 13763 + lincRNA gene RIKEN cDNA 2900052N01 gene
Tssr84920 9 46913619 to 46913632 13 + TSS region transcription start site region 84920
Gm39331 9 46955630 to 46957221 1591 + lncRNA gene predicted gene, 39331
Gm47153 9 46960235 to 46979053 18818 - lincRNA gene predicted gene, 47153
Gm4791 9 46998741 to 47003860 5119 + protein coding gene predicted gene 4791
Gf8 9 47007208 to 47007208 0 QTL gonadal fat pad weight 8
Gm31698 9 47119054 to 47183682 64628 - lincRNA gene predicted gene, 31698
D9Mit330 9 47141866 to 47141979 113 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 330
Ap5q 9 47141866 to 47141979 113 QTL alcohol preference 5 QTL
Cpgi21711 9 47167809 to 47167974 165 CpG island CpG island 21711
Gm31756 9 47232323 to 47240521 8198 + lncRNA gene predicted gene, 31756
Gm39332 9 47239051 to 47243240 4189 - lncRNA gene predicted gene, 39332
Gm31816 9 47259985 to 47368729 108744 - lincRNA gene predicted gene, 31816
Cpgi21712 9 47368085 to 47368309 224 CpG island CpG island 21712
Gm47160 9 47473049 to 47474918 1869 - unclassified gene predicted gene, 47160
Tssr89366 9 47474853 to 47474865 12 - TSS region transcription start site region 89366
Tssr89367 9 47474905 to 47474923 18 - TSS region transcription start site region 89367
Gm47161 9 47481628 to 47486506 4878 - unclassified gene predicted gene, 47161
Gm22286 9 47525616 to 47525722 106 - snRNA gene predicted gene, 22286
Cpgi21713 9 47529695 to 47532013 2318 CpG island CpG island 21713
Tssr89368 9 47530091 to 47530099 8 - TSS region transcription start site region 89368
Cadm1 9 47530173 to 47857637 327464 + protein coding gene cell adhesion molecule 1
Tssr84921 9 47530343 to 47530362 19 + TSS region transcription start site region 84921
Tssr84922 9 47539467 to 47539471 4 + TSS region transcription start site region 84922
Tssr84923 9 47540615 to 47540634 19 + TSS region transcription start site region 84923
Tssr84924 9 47544197 to 47544219 22 + TSS region transcription start site region 84924
Tssr84925 9 47547937 to 47547947 10 + TSS region transcription start site region 84925
Tssr84926 9 47550372 to 47550385 13 + TSS region transcription start site region 84926
Tssr84927 9 47554355 to 47554359 4 + TSS region transcription start site region 84927