Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:110205173-110422102

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarcc1 9 110132024 to 110240178 108154 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Tssr91598 9 110210113 to 110210118 5 - TSS region transcription start site region 91598
Rn4.5s-ps2 9 110241766 to 110241856 90 + pseudogene 4.5s RNA, pseudogene 2
Cspg5 9 110243783 to 110262576 18793 + protein coding gene chondroitin sulfate proteoglycan 5
Cpgi22373 9 110244595 to 110246578 1983 CpG island CpG island 22373
Tssr87332 9 110244920 to 110244944 24 + TSS region transcription start site region 87332
Tssr87333 9 110244949 to 110244964 15 + TSS region transcription start site region 87333
Tssr87334 9 110245109 to 110245190 81 + TSS region transcription start site region 87334
Tssr87335 9 110245382 to 110245417 35 + TSS region transcription start site region 87335
Tssr87336 9 110245421 to 110245491 70 + TSS region transcription start site region 87336
Tssr87337 9 110245506 to 110245518 12 + TSS region transcription start site region 87337
Tssr87338 9 110246215 to 110246236 21 + TSS region transcription start site region 87338
Tssr87339 9 110247260 to 110247272 12 + TSS region transcription start site region 87339
Gm43622 9 110252126 to 110254144 2018 - unclassified gene predicted gene 43622
Gm39429 9 110266638 to 110282667 16029 - lncRNA gene predicted gene, 39429
Tssr87340 9 110281259 to 110281266 7 + TSS region transcription start site region 87340
Tssr87341 9 110281280 to 110281338 58 + TSS region transcription start site region 87341
Mir6236 9 110281287 to 110281409 122 + miRNA gene microRNA 6236
Tssr87342 9 110281342 to 110281352 10 + TSS region transcription start site region 87342
Tssr91599 9 110282653 to 110282678 25 - TSS region transcription start site region 91599
Gm42775 9 110288952 to 110293937 4985 - lincRNA gene predicted gene 42775
Cpgi22374 9 110304896 to 110305624 728 CpG island CpG island 22374
Tssr91600 9 110305057 to 110305120 63 - TSS region transcription start site region 91600
Tssr87343 9 110305185 to 110305229 44 + TSS region transcription start site region 87343
Elp6 9 110305192 to 110322102 16910 + protein coding gene elongator acetyltransferase complex subunit 6
Gm35575 9 110307523 to 110308152 629 - pseudogene predicted gene, 35575
Tssr91601 9 110307716 to 110307725 9 - TSS region transcription start site region 91601
Gm42638 9 110327978 to 110330564 2586 - unclassified gene predicted gene 42638
Tssr87344 9 110329157 to 110329189 32 + TSS region transcription start site region 87344
Cpgi22375 9 110329634 to 110329971 337 CpG island CpG island 22375
Tssr91602 9 110330542 to 110330561 19 - TSS region transcription start site region 91602
Cpgi22376 9 110333116 to 110334115 999 CpG island CpG island 22376
Tssr87345 9 110333276 to 110333322 46 + TSS region transcription start site region 87345
Scap 9 110333288 to 110384949 51661 + protein coding gene SREBF chaperone
Tssr87346 9 110333340 to 110333389 49 + TSS region transcription start site region 87346
Tssr87347 9 110333402 to 110333435 33 + TSS region transcription start site region 87347
Tssr87348 9 110344071 to 110344077 6 + TSS region transcription start site region 87348
Tssr87349 9 110344163 to 110344180 17 + TSS region transcription start site region 87349
Tssr87350 9 110344185 to 110344204 19 + TSS region transcription start site region 87350
Tssr87351 9 110344209 to 110344229 20 + TSS region transcription start site region 87351
Tssr87352 9 110344251 to 110344262 11 + TSS region transcription start site region 87352
Tssr87353 9 110362433 to 110362470 37 + TSS region transcription start site region 87353
5830462I19Rik 9 110372048 to 110375430 3382 - unclassified gene RIKEN cDNA 5830462I19 gene
Cpgi22377 9 110380191 to 110381488 1297 CpG island CpG island 22377
Tssr87354 9 110380941 to 110380949 8 + TSS region transcription start site region 87354
Ptpn23 9 110385084 to 110408210 23126 - protein coding gene protein tyrosine phosphatase, non-receptor type 23
Tssr91603 9 110387585 to 110387596 11 - TSS region transcription start site region 91603
Tssr91604 9 110387641 to 110387661 20 - TSS region transcription start site region 91604
Tssr91605 9 110387708 to 110387729 21 - TSS region transcription start site region 91605
Tssr91606 9 110388084 to 110388102 18 - TSS region transcription start site region 91606
Tssr91607 9 110388203 to 110388222 19 - TSS region transcription start site region 91607
Tssr91608 9 110388227 to 110388243 16 - TSS region transcription start site region 91608
Tssr91609 9 110388351 to 110388363 12 - TSS region transcription start site region 91609
D9Mit292 9 110406012 to 110406136 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 292
Cpgi22378 9 110407591 to 110408695 1104 CpG island CpG island 22378
Tssr91610 9 110408131 to 110408155 24 - TSS region transcription start site region 91610
Tssr91611 9 110408160 to 110408204 44 - TSS region transcription start site region 91611
Tssr91612 9 110408208 to 110408217 9 - TSS region transcription start site region 91612
Tssr91613 9 110408223 to 110408234 11 - TSS region transcription start site region 91613
Tssr87355 9 110415495 to 110415499 4 + TSS region transcription start site region 87355
Tssr87356 9 110415509 to 110415532 23 + TSS region transcription start site region 87356
Tssr87357 9 110415547 to 110415558 11 + TSS region transcription start site region 87357
Tssr3019 9 110415604 to 110415609 5 + TSS region transcription start site region 3019
Tssr87358 9 110415834 to 110415871 37 + TSS region transcription start site region 87358
Tssr87359 9 110417749 to 110417753 4 + TSS region transcription start site region 87359
Tssr87360 9 110419806 to 110419809 3 + TSS region transcription start site region 87360
Ngp 9 110419808 to 110423012 3204 + protein coding gene neutrophilic granule protein
Tssr87361 9 110419841 to 110419862 21 + TSS region transcription start site region 87361
Tssr91614 9 110419954 to 110419963 9 - TSS region transcription start site region 91614
Tssr91615 9 110419968 to 110419997 29 - TSS region transcription start site region 91615
Tssr87362 9 110420111 to 110420117 6 + TSS region transcription start site region 87362
Tssr87363 9 110420805 to 110420833 28 + TSS region transcription start site region 87363
Tssr87364 9 110420834 to 110420884 50 + TSS region transcription start site region 87364
Tssr91616 9 110420861 to 110420874 13 - TSS region transcription start site region 91616
Tssr91617 9 110420876 to 110420899 23 - TSS region transcription start site region 91617
Tssr3020 9 110420885 to 110420889 4 + TSS region transcription start site region 3020
Tssr91618 9 110420908 to 110420919 11 - TSS region transcription start site region 91618
Tssr87365 9 110420911 to 110420918 7 + TSS region transcription start site region 87365
Tssr3021 9 110421289 to 110421296 7 - TSS region transcription start site region 3021
Tssr87366 9 110421693 to 110421707 14 + TSS region transcription start site region 87366
Tssr87367 9 110421710 to 110421745 35 + TSS region transcription start site region 87367
Tssr3022 9 110421732 to 110421743 11 - TSS region transcription start site region 3022