Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:70715508-71075570

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae36 8 14723160 to 71045600 56322440 QTL experimental allergic encephalomyelitis susceptibility 36
Iqcn 8 70703457 to 70717650 14193 + protein coding gene IQ motif containing N
Gm34255 8 70708458 to 70724507 16049 - lncRNA gene predicted gene, 34255
Tssr77809 8 70715753 to 70715759 6 + TSS region transcription start site region 77809
Cpgi20489 8 70718369 to 70718716 347 CpG island CpG island 20489
Tssr77810 8 70718509 to 70718520 11 + TSS region transcription start site region 77810
Tssr77811 8 70718534 to 70718549 15 + TSS region transcription start site region 77811
Gm3336 8 70718543 to 70722634 4091 + protein coding gene predicted gene 3336
Tssr81655 8 70723539 to 70723573 34 - TSS region transcription start site region 81655
Tssr81656 8 70723587 to 70723605 18 - TSS region transcription start site region 81656
Tssr77812 8 70724044 to 70724059 15 + TSS region transcription start site region 77812
Pde4c 8 70724064 to 70751186 27122 + protein coding gene phosphodiesterase 4C, cAMP specific
Tssr77813 8 70724067 to 70724078 11 + TSS region transcription start site region 77813
Tssr77814 8 70724109 to 70724122 13 + TSS region transcription start site region 77814
Tssr77815 8 70724176 to 70724185 9 + TSS region transcription start site region 77815
Cpgi20490 8 70729828 to 70730499 671 CpG island CpG island 20490
Cpgi20491 8 70742998 to 70743719 721 CpG island CpG island 20491
Tssr77816 8 70743108 to 70743114 6 + TSS region transcription start site region 77816
Cpgi20492 8 70743746 to 70744653 907 CpG island CpG island 20492
Cpgi20493 8 70745098 to 70745486 388 CpG island CpG island 20493
Cpgi20494 8 70753246 to 70753644 398 CpG island CpG island 20494
Cpgi20495 8 70754423 to 70755660 1237 CpG island CpG island 20495
Rab3a 8 70754679 to 70758677 3998 + protein coding gene RAB3A, member RAS oncogene family
Tssr77817 8 70754679 to 70754751 72 + TSS region transcription start site region 77817
Tssr77818 8 70755880 to 70755892 12 + TSS region transcription start site region 77818
Tssr77819 8 70755950 to 70755968 18 + TSS region transcription start site region 77819
Tssr77820 8 70756453 to 70756473 20 + TSS region transcription start site region 77820
Tssr77821 8 70758087 to 70758098 11 + TSS region transcription start site region 77821
Tssr77822 8 70758108 to 70758134 26 + TSS region transcription start site region 77822
Tssr77823 8 70758183 to 70758200 17 + TSS region transcription start site region 77823
Tssr2601 8 70758256 to 70758267 11 + TSS region transcription start site region 2601
Mpv17l2 8 70758649 to 70760921 2272 - protein coding gene MPV17 mitochondrial membrane protein-like 2
Cpgi20496 8 70760267 to 70761438 1171 CpG island CpG island 20496
Tssr81657 8 70760499 to 70760511 12 - TSS region transcription start site region 81657
Tssr81658 8 70760845 to 70760854 9 - TSS region transcription start site region 81658
Tssr81659 8 70760889 to 70760953 64 - TSS region transcription start site region 81659
Tssr81660 8 70760955 to 70760968 13 - TSS region transcription start site region 81660
Ifi30 8 70762774 to 70766663 3889 - protein coding gene interferon gamma inducible protein 30
Tssr77824 8 70762934 to 70762979 45 + TSS region transcription start site region 77824
Tssr81661 8 70762959 to 70762976 17 - TSS region transcription start site region 81661
Tssr81662 8 70763001 to 70763026 25 - TSS region transcription start site region 81662
Tssr77825 8 70763718 to 70763739 21 + TSS region transcription start site region 77825
Tssr81663 8 70763762 to 70763825 63 - TSS region transcription start site region 81663
Tssr81664 8 70764125 to 70764136 11 - TSS region transcription start site region 81664
Tssr81665 8 70764151 to 70764184 33 - TSS region transcription start site region 81665
Tssr81666 8 70764602 to 70764616 14 - TSS region transcription start site region 81666
Tssr81667 8 70764629 to 70764644 15 - TSS region transcription start site region 81667
Tssr81668 8 70764758 to 70764782 24 - TSS region transcription start site region 81668
Tssr81669 8 70764979 to 70764995 16 - TSS region transcription start site region 81669
Tssr81670 8 70765004 to 70765021 17 - TSS region transcription start site region 81670
Tssr81671 8 70765058 to 70765083 25 - TSS region transcription start site region 81671
Cpgi20497 8 70765829 to 70766435 606 CpG island CpG island 20497
Tssr77826 8 70766059 to 70766073 14 + TSS region transcription start site region 77826
6330537M06Rik 8 70766579 to 70768220 1641 + unclassified gene RIKEN cDNA 6330537M06 gene
Tssr81672 8 70766654 to 70766671 17 - TSS region transcription start site region 81672
Pik3r2 8 70768178 to 70776715 8537 - protein coding gene phosphoinositide-3-kinase regulatory subunit 2
Cpgi20498 8 70769404 to 70769909 505 CpG island CpG island 20498
Gm3598 8 70773763 to 70774423 660 protein coding gene predicted gene 3598
Cpgi20499 8 70774639 to 70774808 169 CpG island CpG island 20499
Cpgi20500 8 70775873 to 70777723 1850 CpG island CpG island 20500
Tssr81673 8 70776634 to 70776640 6 - TSS region transcription start site region 81673
Tssr81674 8 70776650 to 70776716 66 - TSS region transcription start site region 81674
Tssr81675 8 70776720 to 70776731 11 - TSS region transcription start site region 81675
Tssr77827 8 70776762 to 70776773 11 + TSS region transcription start site region 77827
Tssr77828 8 70776778 to 70776829 51 + TSS region transcription start site region 77828
Tssr77829 8 70776847 to 70776897 50 + TSS region transcription start site region 77829
2010320M18Rik 8 70776862 to 70777606 744 + lincRNA gene RIKEN cDNA 2010320M18 gene
Tssr77830 8 70777332 to 70777364 32 + TSS region transcription start site region 77830
Mast3 8 70778117 to 70805054 26937 - protein coding gene microtubule associated serine/threonine kinase 3
Cpgi20501 8 70787715 to 70788488 773 CpG island CpG island 20501
Cpgi20502 8 70791960 to 70793249 1289 CpG island CpG island 20502
Tssr81676 8 70792392 to 70792451 59 - TSS region transcription start site region 81676
Cpgi20503 8 70796334 to 70798174 1840 CpG island CpG island 20503
Tssr81677 8 70796992 to 70797019 27 - TSS region transcription start site region 81677
Mir7240 8 70798135 to 70798192 57 + miRNA gene microRNA 7240
Cpgi20504 8 70803880 to 70805250 1370 CpG island CpG island 20504
Tssr81678 8 70804979 to 70804999 20 - TSS region transcription start site region 81678
Tssr81679 8 70805001 to 70805010 9 - TSS region transcription start site region 81679
Tssr77831 8 70808378 to 70808400 22 + TSS region transcription start site region 77831
Tssr77832 8 70808431 to 70808474 43 + TSS region transcription start site region 77832
Il12rb1 8 70808449 to 70821424 12975 + protein coding gene interleukin 12 receptor, beta 1
Cpgi20505 8 70816674 to 70817340 666 CpG island CpG island 20505
Cpgi20506 8 70820485 to 70820761 276 CpG island CpG island 20506
Cpgi20507 8 70821446 to 70821977 531 CpG island CpG island 20507
Arrdc2 8 70835129 to 70839720 4591 - protein coding gene arrestin domain containing 2
Cpgi20508 8 70838668 to 70840138 1470 CpG island CpG island 20508
Tssr81680 8 70839526 to 70839542 16 - TSS region transcription start site region 81680
Tssr81681 8 70839651 to 70839666 15 - TSS region transcription start site region 81681
Tssr77833 8 70841272 to 70841302 30 + TSS region transcription start site region 77833
Kcnn1 8 70842049 to 70863258 21209 - protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
Cpgi20509 8 70842510 to 70842768 258 CpG island CpG island 20509
Cpgi20510 8 70856494 to 70857088 594 CpG island CpG island 20510
Cpgi20511 8 70862670 to 70864561 1891 CpG island CpG island 20511
A230052G05Rik 8 70863127 to 70865428 2301 + unclassified gene RIKEN cDNA A230052G05 gene
Tssr81682 8 70863749 to 70863765 16 - TSS region transcription start site region 81682
Cpgi20512 8 70864568 to 70865964 1396 CpG island CpG island 20512
Ccdc124 8 70868226 to 70873490 5264 - protein coding gene coiled-coil domain containing 124
Cpgi20513 8 70868424 to 70869228 804 CpG island CpG island 20513
Cpgi20514 8 70869797 to 70870066 269 CpG island CpG island 20514
Cpgi20515 8 70872940 to 70873887 947 CpG island CpG island 20515
Tssr81683 8 70873231 to 70873238 7 - TSS region transcription start site region 81683
Tssr81684 8 70873477 to 70873501 24 - TSS region transcription start site region 81684
Slc5a5 8 70882889 to 70892757 9868 - protein coding gene solute carrier family 5 (sodium iodide symporter), member 5
Cpgi20516 8 70887757 to 70887987 230 CpG island CpG island 20516
Tssr81685 8 70887834 to 70887894 60 - TSS region transcription start site region 81685
Cpgi20517 8 70891249 to 70893267 2018 CpG island CpG island 20517
Tssr81686 8 70892752 to 70892758 6 - TSS region transcription start site region 81686
Rpl18a 8 70894722 to 70897412 2690 - protein coding gene ribosomal protein L18A
Mir7067 8 70895508 to 70895570 62 - miRNA gene microRNA 7067
Tssr81687 8 70895713 to 70895719 6 - TSS region transcription start site region 81687
Snora68 8 70895759 to 70895856 97 - snoRNA gene small nucleolar RNA, H/ACA box 68
Tssr81688 8 70895883 to 70895889 6 - TSS region transcription start site region 81688
Cpgi20518 8 70896703 to 70897872 1169 CpG island CpG island 20518
Tssr81689 8 70897407 to 70897423 16 - TSS region transcription start site region 81689
Tssr81690 8 70897437 to 70897448 11 - TSS region transcription start site region 81690
Tssr77834 8 70897625 to 70897670 45 + TSS region transcription start site region 77834
Cpgi20519 8 70905470 to 70906802 1332 CpG island CpG island 20519
Tssr77835 8 70905970 to 70906017 47 + TSS region transcription start site region 77835
Map1s 8 70905974 to 70917529 11555 + protein coding gene microtubule-associated protein 1S
Mir1969 8 70925525 to 70925618 93 + miRNA gene microRNA 1969
Gm10654 8 70931405 to 70933037 1632 + protein coding gene predicted gene 10654
1700026F02Rik 8 71006728 to 71026755 20027 - lincRNA gene RIKEN cDNA 1700026F02 gene
D8Mit179.1 8 71012779 to 71012889 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179.1
D8Mit179 8 71012950 to 71013088 138 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179
D8Mit179.2 8 71013003 to 71013112 109 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 179.2
Tssr77836 8 71026588 to 71026630 42 + TSS region transcription start site region 77836
Gm35256 8 71026792 to 71126576 99784 + lincRNA gene predicted gene, 35256
Gm18209 8 71040837 to 71041758 921 - pseudogene predicted gene, 18209
Gm17576 8 71042295 to 71085766 43471 - lncRNA gene predicted gene, 17576
D8Mit178 8 71045453 to 71045600 147 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 178
Vmn2r-ps90 8 71059326 to 71074910 15584 - pseudogene vomeronasal 2, receptor, pseudogene 90