Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:47395665-47990416

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stox2 8 47180048 to 47412459 232411 - protein coding gene storkhead box 2
4930448N21Rik 8 47294271 to 47446361 152090 unclassified gene RIKEN cDNA 4930448N21 gene
Cpgi20328 8 47412357 to 47414093 1736 CpG island CpG island 20328
Gm10083 8 47412408 to 47414164 1756 + protein coding gene predicted gene 10083
Tssr81233 8 47413646 to 47413686 40 - TSS region transcription start site region 81233
Tssr81234 8 47413779 to 47413826 47 - TSS region transcription start site region 81234
Tssr81235 8 47413833 to 47413855 22 - TSS region transcription start site region 81235
Tssr2564 8 47425613 to 47425615 2 + TSS region transcription start site region 2564
Gm22857 8 47440418 to 47440551 133 + snoRNA gene predicted gene, 22857
Trappc11 8 47490128 to 47533470 43342 - protein coding gene trafficking protein particle complex 11
Cpgi20329 8 47533080 to 47534254 1174 CpG island CpG island 20329
Tssr81236 8 47533405 to 47533412 7 - TSS region transcription start site region 81236
Tssr81237 8 47533422 to 47533436 14 - TSS region transcription start site region 81237
Tssr81238 8 47533439 to 47533477 38 - TSS region transcription start site region 81238
Tssr77336 8 47533639 to 47533709 70 + TSS region transcription start site region 77336
Rwdd4a 8 47533645 to 47552837 19192 + protein coding gene RWD domain containing 4A
Gm45576 8 47557529 to 47567896 10367 + lincRNA gene predicted gene 45576
Gm27409 8 47591668 to 47591747 79 + miRNA gene predicted gene, 27409
Gm39172 8 47594821 to 47595550 729 + lncRNA gene predicted gene, 39172
Gm45575 8 47627553 to 47628100 547 - pseudogene predicted gene 45575
Gm8623 8 47632329 to 47632764 435 - pseudogene predicted gene 8623
Tssr81239 8 47632810 to 47632820 10 - TSS region transcription start site region 81239
Cpgi20330 8 47646679 to 47647240 561 CpG island CpG island 20330
Ing2 8 47667178 to 47675159 7981 - protein coding gene inhibitor of growth family, member 2
Cpgi20331 8 47673467 to 47676295 2828 CpG island CpG island 20331
Tssr81240 8 47673472 to 47673483 11 - TSS region transcription start site region 81240
Tssr2565 8 47674824 to 47674833 9 - TSS region transcription start site region 2565
Tssr81241 8 47674835 to 47674868 33 - TSS region transcription start site region 81241
Tssr81242 8 47675112 to 47675126 14 - TSS region transcription start site region 81242
Tssr81243 8 47675130 to 47675165 35 - TSS region transcription start site region 81243
Tssr81244 8 47675179 to 47675190 11 - TSS region transcription start site region 81244
Tssr77337 8 47675362 to 47675413 51 + TSS region transcription start site region 77337
AA386476 8 47675391 to 47685239 9848 + bidirectional promoter lncRNA gene expressed sequence AA386476
Tssr81245 8 47675588 to 47675617 29 - TSS region transcription start site region 81245
Gm31692 8 47681281 to 47695396 14115 - lncRNA gene predicted gene, 31692
Gm31638 8 47685665 to 47700416 14751 + lncRNA gene predicted gene, 31638
Cpgi20332 8 47690882 to 47691033 151 CpG island CpG island 20332
Cdkn2aip 8 47709344 to 47713932 4588 - protein coding gene CDKN2A interacting protein
Tssr81246 8 47710620 to 47710624 4 - TSS region transcription start site region 81246
Tssr81247 8 47711656 to 47711677 21 - TSS region transcription start site region 81247
Cpgi20333 8 47713062 to 47714761 1699 CpG island CpG island 20333
E030037K01Rik 8 47713266 to 47715021 1755 + antisense lncRNA gene RIKEN cDNA E030037K01 gene
Tssr81248 8 47713895 to 47713908 13 - TSS region transcription start site region 81248
Tssr81249 8 47713920 to 47713938 18 - TSS region transcription start site region 81249
Tssr81250 8 47714105 to 47714110 5 - TSS region transcription start site region 81250
Tssr81251 8 47714135 to 47714156 21 - TSS region transcription start site region 81251
Tssr81252 8 47714163 to 47714170 7 - TSS region transcription start site region 81252
Tssr81253 8 47714489 to 47714511 22 - TSS region transcription start site region 81253
n-R5s96 8 47719246 to 47719369 123 + rRNA gene nuclear encoded rRNA 5S 96
Gm31786 8 47744712 to 47750134 5422 - lincRNA gene predicted gene, 31786
Tssr81254 8 47750133 to 47750140 7 - TSS region transcription start site region 81254
Tssr81255 8 47750156 to 47750197 41 - TSS region transcription start site region 81255
Gm45824 8 47764054 to 47766125 2071 - lincRNA gene predicted gene 45824
Gm45864 8 47773555 to 47777802 4247 + lincRNA gene predicted gene 45864
Tssr77338 8 47788842 to 47788848 6 + TSS region transcription start site region 77338
1700061N14Rik 8 47811724 to 47818221 6497 - lincRNA gene RIKEN cDNA 1700061N14 gene
Tssr81256 8 47818179 to 47818184 5 - TSS region transcription start site region 81256
Tssr81257 8 47818199 to 47818225 26 - TSS region transcription start site region 81257
Cldn24 8 47822143 to 47822805 662 + protein coding gene claudin 24
Tssr77339 8 47824459 to 47824471 12 + TSS region transcription start site region 77339
Cldn22 8 47824482 to 47825475 993 + protein coding gene claudin 22
Tssr77340 8 47824530 to 47824542 12 + TSS region transcription start site region 77340
Wwc2 8 47827595 to 47990551 162956 - protein coding gene WW, C2 and coiled-coil domain containing 2
Tssr77341 8 47836927 to 47836929 2 + TSS region transcription start site region 77341
Cpgi20334 8 47847350 to 47847585 235 CpG island CpG island 20334
Tssr77342 8 47853849 to 47853850 1 + TSS region transcription start site region 77342
n-R5s97 8 47899182 to 47899294 112 + rRNA gene nuclear encoded rRNA 5S 97
Tssr81258 8 47941558 to 47941562 4 - TSS region transcription start site region 81258
Gm39173 8 47943096 to 47952674 9578 - lncRNA gene predicted gene, 39173
Tssr81259 8 47948359 to 47948373 14 - TSS region transcription start site region 81259
Tssr81260 8 47948385 to 47948407 22 - TSS region transcription start site region 81260
Gm31984 8 47971635 to 47975581 3946 - lncRNA gene predicted gene, 31984
Tssr81261 8 47974307 to 47974309 2 - TSS region transcription start site region 81261
Cpgi20335 8 47974866 to 47975028 162 CpG island CpG island 20335
Cpgi20336 8 47989481 to 47991409 1928 CpG island CpG island 20336
Tssr81262 8 47990361 to 47990400 39 - TSS region transcription start site region 81262