Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:119578238-120078276

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnaaf1 8 119575235 to 119598454 23219 + protein coding gene dynein, axonemal assembly factor 1
Tssr83146 8 119585821 to 119585851 30 - TSS region transcription start site region 83146
Cpgi21117 8 119585998 to 119586293 295 CpG island CpG island 21117
Tssr83147 8 119586116 to 119586122 6 - TSS region transcription start site region 83147
Taf1c 8 119597974 to 119605240 7266 - protein coding gene TATA-box binding protein associated factor, RNA polymerase I, C
Rps13-ps4 8 119602170 to 119602625 455 - pseudogene ribosomal protein S13, pseudogene 4
Cpgi21118 8 119604679 to 119605586 907 CpG island CpG island 21118
Tssr83148 8 119605199 to 119605213 14 - TSS region transcription start site region 83148
Cpgi21119 8 119612462 to 119612896 434 CpG island CpG island 21119
Tssr79705 8 119612701 to 119612732 31 + TSS region transcription start site region 79705
Adad2 8 119612747 to 119616924 4177 + protein coding gene adenosine deaminase domain containing 2
Kcng4 8 119623854 to 119635680 11826 - protein coding gene potassium voltage-gated channel, subfamily G, member 4
Cpgi21120 8 119625705 to 119626340 635 CpG island CpG island 21120
Tssr83149 8 119625915 to 119625943 28 - TSS region transcription start site region 83149
Gm46055 8 119631151 to 119632876 1725 - lncRNA gene predicted gene, 46055
Cpgi21121 8 119632858 to 119633577 719 CpG island CpG island 21121
Tssr83150 8 119635467 to 119635478 11 - TSS region transcription start site region 83150
Tssr83151 8 119635491 to 119635505 14 - TSS region transcription start site region 83151
Tssr83152 8 119635511 to 119635536 25 - TSS region transcription start site region 83152
Tssr83153 8 119635553 to 119635575 22 - TSS region transcription start site region 83153
Gm46054 8 119635818 to 119646868 11050 + lncRNA gene predicted gene, 46054
Gm32352 8 119659475 to 119670881 11406 - antisense lncRNA gene predicted gene, 32352
Tssr83154 8 119661301 to 119661334 33 - TSS region transcription start site region 83154
Tssr79706 8 119666243 to 119666252 9 + TSS region transcription start site region 79706
Tssr79707 8 119666272 to 119666277 5 + TSS region transcription start site region 79707
Tssr2704 8 119666330 to 119666345 15 + TSS region transcription start site region 2704
Tssr79708 8 119666359 to 119666372 13 + TSS region transcription start site region 79708
Wfdc1 8 119666365 to 119688020 21655 + protein coding gene WAP four-disulfide core domain 1
Tssr79709 8 119666467 to 119666480 13 + TSS region transcription start site region 79709
Tssr79710 8 119666487 to 119666496 9 + TSS region transcription start site region 79710
Tssr79711 8 119666498 to 119666511 13 + TSS region transcription start site region 79711
Tssr83155 8 119693779 to 119693795 16 - TSS region transcription start site region 83155
Cpgi21122 8 119699888 to 119700168 280 CpG island CpG island 21122
Atp2c2 8 119700009 to 119757717 57708 + protein coding gene ATPase, Ca++ transporting, type 2C, member 2
Tssr79712 8 119700017 to 119700062 45 + TSS region transcription start site region 79712
5033405D04Rik 8 119714453 to 119715451 998 unclassified gene RIKEN cDNA 5033405D04 gene
Gm45747 8 119714454 to 119715452 998 + unclassified gene predicted gene 45747
Tssr79713 8 119754209 to 119754240 31 + TSS region transcription start site region 79713
Tssr79714 8 119754242 to 119754266 24 + TSS region transcription start site region 79714
Cpgi21123 8 119755472 to 119755750 278 CpG island CpG island 21123
Meak7 8 119760587 to 119778416 17829 - protein coding gene MTOR associated protein , eak-7 homolog
Cpgi21124 8 119778327 to 119778619 292 CpG island CpG island 21124
Tssr83156 8 119778380 to 119778431 51 - TSS region transcription start site region 83156
Tssr79715 8 119809214 to 119809227 13 + TSS region transcription start site region 79715
Cotl1 8 119809222 to 119840544 31322 - protein coding gene coactosin-like 1 (Dictyostelium)
Tssr83157 8 119809953 to 119809968 15 - TSS region transcription start site region 83157
Tssr83158 8 119810033 to 119810079 46 - TSS region transcription start site region 83158
Tssr79716 8 119810045 to 119810073 28 + TSS region transcription start site region 79716
Tssr83159 8 119810088 to 119810136 48 - TSS region transcription start site region 83159
Tssr83160 8 119810185 to 119810203 18 - TSS region transcription start site region 83160
Tssr83161 8 119810216 to 119810227 11 - TSS region transcription start site region 83161
Tssr83162 8 119810263 to 119810281 18 - TSS region transcription start site region 83162
Tssr83163 8 119810330 to 119810347 17 - TSS region transcription start site region 83163
Tssr79717 8 119811339 to 119811344 5 + TSS region transcription start site region 79717
Tssr83164 8 119822703 to 119822724 21 - TSS region transcription start site region 83164
Tssr83165 8 119822735 to 119822752 17 - TSS region transcription start site region 83165
Tssr83166 8 119828238 to 119828276 38 - TSS region transcription start site region 83166
Tssr79718 8 119828859 to 119828892 33 + TSS region transcription start site region 79718
Tssr79719 8 119829652 to 119829659 7 + TSS region transcription start site region 79719
Tssr83167 8 119830613 to 119830624 11 - TSS region transcription start site region 83167
Tssr79720 8 119830772 to 119830784 12 + TSS region transcription start site region 79720
Tssr83168 8 119833512 to 119833538 26 - TSS region transcription start site region 83168
Tssr83169 8 119834222 to 119834252 30 - TSS region transcription start site region 83169
Tssr83170 8 119834413 to 119834425 12 - TSS region transcription start site region 83170
Tssr83171 8 119836681 to 119836704 23 - TSS region transcription start site region 83171
Cpgi21125 8 119839943 to 119840945 1002 CpG island CpG island 21125
Tssr83172 8 119840185 to 119840223 38 - TSS region transcription start site region 83172
Tssr83173 8 119840531 to 119840549 18 - TSS region transcription start site region 83173
Tssr83174 8 119840567 to 119840570 3 - TSS region transcription start site region 83174
Tssr83175 8 119840580 to 119840584 4 - TSS region transcription start site region 83175
Tssr79721 8 119840725 to 119840749 24 + TSS region transcription start site region 79721
D8Mit354.2 8 119843552 to 119843674 122 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 354.2
Cpgi21126 8 119861900 to 119862764 864 CpG island CpG island 21126
Tssr79722 8 119862239 to 119862294 55 + TSS region transcription start site region 79722
Klhl36 8 119862266 to 119876995 14729 + protein coding gene kelch-like 36
Cpgi21127 8 119869461 to 119870640 1179 CpG island CpG island 21127
Usp10 8 119910360 to 119957560 47200 + protein coding gene ubiquitin specific peptidase 10
Cpgi21128 8 119910378 to 119911605 1227 CpG island CpG island 21128
Tssr79723 8 119910792 to 119910848 56 + TSS region transcription start site region 79723
Gm20388 8 119910841 to 124345722 4434881 + protein coding gene predicted gene 20388
Tssr79724 8 119918313 to 119918337 24 + TSS region transcription start site region 79724
Cpgi21129 8 119941555 to 119941930 375 CpG island CpG island 21129
Tssr79725 8 119942024 to 119942057 33 + TSS region transcription start site region 79725
Tssr79726 8 119947705 to 119947729 24 + TSS region transcription start site region 79726
Tssr2705 8 119975193 to 119975196 3 + TSS region transcription start site region 2705
Cpgi21130 8 119992069 to 119993072 1003 CpG island CpG island 21130
Crispld2 8 119992438 to 120052793 60355 + protein coding gene cysteine-rich secretory protein LCCL domain containing 2
Tssr79727 8 119992500 to 119992526 26 + TSS region transcription start site region 79727
Tssr79728 8 120002699 to 120002710 11 + TSS region transcription start site region 79728
Tssr79729 8 120002720 to 120002741 21 + TSS region transcription start site region 79729
Gm15684 8 120036194 to 120045287 9093 - antisense lncRNA gene predicted gene 15684
Tssr2706 8 120041443 to 120041459 16 + TSS region transcription start site region 2706
Tssr83176 8 120042761 to 120042768 7 - TSS region transcription start site region 83176
Tssr79730 8 120042936 to 120042944 8 + TSS region transcription start site region 79730
Tssr79731 8 120042962 to 120042972 10 + TSS region transcription start site region 79731
Tssr79732 8 120050227 to 120050262 35 + TSS region transcription start site region 79732
Cpgi21131 8 120062901 to 120063136 235 CpG island CpG island 21131