Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:117071007-118331054

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkd1l2 8 116995679 to 117082449 86770 - protein coding gene polycystic kidney disease 1 like 2
Tssr2696 8 117074883 to 117074895 12 + TSS region transcription start site region 2696
Bco1 8 117095854 to 117133720 37866 + protein coding gene beta-carotene oxygenase 1
Tssr79578 8 117095859 to 117095875 16 + TSS region transcription start site region 79578
Tssr79579 8 117115840 to 117115844 4 + TSS region transcription start site region 79579
Gm20694 8 117125335 to 117125738 403 + pseudogene predicted gene 20694
Cpgi21096 8 117157294 to 117158870 1576 CpG island CpG island 21096
Tssr83093 8 117157785 to 117157803 18 - TSS region transcription start site region 83093
Tssr79580 8 117157950 to 117157967 17 + TSS region transcription start site region 79580
Tssr79581 8 117157972 to 117158035 63 + TSS region transcription start site region 79581
Gan 8 117158135 to 117205186 47051 + protein coding gene giant axonal neuropathy
Tssr83094 8 117158493 to 117158528 35 - TSS region transcription start site region 83094
Fbtq3 8 117238570 to 117238700 130 QTL femoral bone trait QTL 3
D8Mit167 8 117238570 to 117238700 130 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 167
Bmd39 8 117238700 to 32016544 -85222156 QTL bone mineral density 39
Cpgi21097 8 117256077 to 117257668 1591 CpG island CpG island 21097
Tssr79582 8 117256659 to 117256724 65 + TSS region transcription start site region 79582
Tssr79583 8 117256733 to 117256755 22 + TSS region transcription start site region 79583
Tssr79584 8 117256798 to 117256803 5 + TSS region transcription start site region 79584
Tssr79585 8 117256810 to 117256829 19 + TSS region transcription start site region 79585
Tssr79586 8 117256848 to 117256877 29 + TSS region transcription start site region 79586
Cmip 8 117257064 to 117459430 202366 + protein coding gene c-Maf inducing protein
Tssr79587 8 117257082 to 117257107 25 + TSS region transcription start site region 79587
Tssr79588 8 117257136 to 117257147 11 + TSS region transcription start site region 79588
Tssr83095 8 117258027 to 117258031 4 - TSS region transcription start site region 83095
A130010C12Rik 8 117258078 to 117260799 2721 unclassified gene RIKEN cDNA A130010C12 gene
Tssr79589 8 117258102 to 117258103 1 + TSS region transcription start site region 79589
Tssr79590 8 117265904 to 117265909 5 + TSS region transcription start site region 79590
Tssr79591 8 117266073 to 117266091 18 + TSS region transcription start site region 79591
Tssr79592 8 117274675 to 117274709 34 + TSS region transcription start site region 79592
Tssr79593 8 117275083 to 117275097 14 + TSS region transcription start site region 79593
Tssr79594 8 117275117 to 117275132 15 + TSS region transcription start site region 79594
Tssr79595 8 117275137 to 117275174 37 + TSS region transcription start site region 79595
Tssr79596 8 117275197 to 117275215 18 + TSS region transcription start site region 79596
4930572C08Rik 8 117290668 to 117292196 1528 unclassified gene RIKEN cDNA 4930572C08 gene
Tssr79597 8 117302466 to 117302481 15 + TSS region transcription start site region 79597
Tssr79598 8 117307732 to 117307736 4 + TSS region transcription start site region 79598
Tssr79599 8 117328874 to 117328878 4 + TSS region transcription start site region 79599
Tssr79600 8 117330396 to 117330481 85 + TSS region transcription start site region 79600
Tssr79601 8 117340196 to 117340199 3 + TSS region transcription start site region 79601
Tssr79602 8 117340472 to 117340494 22 + TSS region transcription start site region 79602
Tssr79603 8 117340535 to 117340550 15 + TSS region transcription start site region 79603
Tssr79604 8 117342670 to 117342673 3 + TSS region transcription start site region 79604
Tssr2697 8 117343258 to 117343307 49 + TSS region transcription start site region 2697
Tssr83096 8 117343677 to 117343691 14 - TSS region transcription start site region 83096
Slpapn3 8 117357915 to 117357915 0 QTL average percent sleep per night 3
Tssr79605 8 117365040 to 117365054 14 + TSS region transcription start site region 79605
Tssr79606 8 117379348 to 117379385 37 + TSS region transcription start site region 79606
Tssr79607 8 117379389 to 117379404 15 + TSS region transcription start site region 79607
Tssr79608 8 117401165 to 117401183 18 + TSS region transcription start site region 79608
Tssr79609 8 117401370 to 117401384 14 + TSS region transcription start site region 79609
Tssr79610 8 117401426 to 117401482 56 + TSS region transcription start site region 79610
Tssr79611 8 117401551 to 117401585 34 + TSS region transcription start site region 79611
Tssr79612 8 117403822 to 117403858 36 + TSS region transcription start site region 79612
Tssr79613 8 117410652 to 117410654 2 + TSS region transcription start site region 79613
Tssr79614 8 117411056 to 117411059 3 + TSS region transcription start site region 79614
Tssr79615 8 117411305 to 117411322 17 + TSS region transcription start site region 79615
Gm39260 8 117417466 to 117423209 5743 - lncRNA gene predicted gene, 39260
Tssr83097 8 117423088 to 117423125 37 - TSS region transcription start site region 83097
D8Mit368 8 117431548 to 117431660 112 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-368
Cpgi21098 8 117436572 to 117436890 318 CpG island CpG island 21098
D8Mit154 8 117451460 to 117451603 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 154
Mir7077 8 117453023 to 117453079 56 + miRNA gene microRNA 7077
Tssr79616 8 117456876 to 117456938 62 + TSS region transcription start site region 79616
Mir7078 8 117459265 to 117459328 63 + miRNA gene microRNA 7078
Tssr79617 8 117459324 to 117459336 12 + TSS region transcription start site region 79617
Tssr79618 8 117459341 to 117459362 21 + TSS region transcription start site region 79618
Tssr79619 8 117459375 to 117459407 32 + TSS region transcription start site region 79619
Tssr79620 8 117459717 to 117459743 26 + TSS region transcription start site region 79620
Tssr79621 8 117459777 to 117459785 8 + TSS region transcription start site region 79621
Tssr79622 8 117460221 to 117460236 15 + TSS region transcription start site region 79622
Tssr79623 8 117460340 to 117460349 9 + TSS region transcription start site region 79623
Tssr79624 8 117460417 to 117460419 2 + TSS region transcription start site region 79624
Tssr79625 8 117460526 to 117460540 14 + TSS region transcription start site region 79625
Tssr79626 8 117460599 to 117460647 48 + TSS region transcription start site region 79626
Tssr79627 8 117460731 to 117460757 26 + TSS region transcription start site region 79627
Tssr79628 8 117460795 to 117460812 17 + TSS region transcription start site region 79628
Tssr79629 8 117460856 to 117460881 25 + TSS region transcription start site region 79629
Tssr79630 8 117460949 to 117460989 40 + TSS region transcription start site region 79630
Tssr79631 8 117461064 to 117461095 31 + TSS region transcription start site region 79631
Tssr79632 8 117461101 to 117461127 26 + TSS region transcription start site region 79632
Tssr79633 8 117461139 to 117461158 19 + TSS region transcription start site region 79633
Tssr79634 8 117461183 to 117461230 47 + TSS region transcription start site region 79634
Tssr83098 8 117461248 to 117461266 18 - TSS region transcription start site region 83098
Tssr83099 8 117461496 to 117461503 7 - TSS region transcription start site region 83099
Cpgi21099 8 117470295 to 117470543 248 CpG island CpG island 21099
Tssr83100 8 117480166 to 117480169 3 - TSS region transcription start site region 83100
Cpgi21100 8 117498103 to 117498917 814 CpG island CpG island 21100
Tssr79635 8 117498251 to 117498264 13 + TSS region transcription start site region 79635
Tssr79636 8 117498272 to 117498291 19 + TSS region transcription start site region 79636
Plcg2 8 117498291 to 117635142 136851 + protein coding gene phospholipase C, gamma 2
Tssr79637 8 117498293 to 117498318 25 + TSS region transcription start site region 79637
Tssr79638 8 117504001 to 117504007 6 + TSS region transcription start site region 79638
Gm27361 8 117546972 to 117547026 54 - miRNA gene predicted gene, 27361
Tssr79639 8 117548907 to 117548919 12 + TSS region transcription start site region 79639
Cpgi21101 8 117589967 to 117590344 377 CpG island CpG island 21101
Tssr79640 8 117595163 to 117595169 6 + TSS region transcription start site region 79640
D8Mit216 8 117608477 to 117608587 110 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 216
D8Mit276 8 117626099 to 117626309 210 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 276
Cpgi21102 8 117634825 to 117634988 163 CpG island CpG island 21102
Sdr42e1 8 117661399 to 117673689 12290 - protein coding gene short chain dehydrogenase/reductase family 42E, member 1
Cpgi21103 8 117663536 to 117663737 201 CpG island CpG island 21103
Tssr83101 8 117671260 to 117671271 11 - TSS region transcription start site region 83101
Tssr83102 8 117671501 to 117671523 22 - TSS region transcription start site region 83102
Tssr83103 8 117671526 to 117671555 29 - TSS region transcription start site region 83103
Cpgi21104 8 117673378 to 117673670 292 CpG island CpG island 21104
Tssr83104 8 117673632 to 117673655 23 - TSS region transcription start site region 83104
Tssr83105 8 117673663 to 117673674 11 - TSS region transcription start site region 83105
Tssr83106 8 117673682 to 117673701 19 - TSS region transcription start site region 83106
Gm31717 8 117675815 to 117677209 1394 - lincRNA gene predicted gene, 31717
Gm38416 8 117681622 to 117693198 11576 + lincRNA gene predicted gene, 38416
Tssr83107 8 117692255 to 117692278 23 - TSS region transcription start site region 83107
Tssr83108 8 117692281 to 117692298 17 - TSS region transcription start site region 83108
Tssr79641 8 117701007 to 117701054 47 + TSS region transcription start site region 79641
Tssr79642 8 117701064 to 117701084 20 + TSS region transcription start site region 79642
Tssr79643 8 117701820 to 117701850 30 + TSS region transcription start site region 79643
Hsd17b2 8 117701904 to 117759027 57123 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 2
Tssr79644 8 117701937 to 117701956 19 + TSS region transcription start site region 79644
Cpgi21105 8 117701990 to 117702159 169 CpG island CpG island 21105
Tssr79645 8 117702056 to 117702061 5 + TSS region transcription start site region 79645
Tssr79646 8 117702189 to 117702200 11 + TSS region transcription start site region 79646
Gm45776 8 117712570 to 117714091 1521 + unclassified gene predicted gene 45776
Tssr83109 8 117714219 to 117714227 8 - TSS region transcription start site region 83109
Tssr79647 8 117739066 to 117739067 1 + TSS region transcription start site region 79647
Gm31774 8 117746331 to 117748260 1929 - antisense lncRNA gene predicted gene, 31774
Tssr83110 8 117748253 to 117748262 9 - TSS region transcription start site region 83110
Gm39261 8 117761601 to 117776462 14861 - lncRNA gene predicted gene, 39261
Mphosph6 8 117791642 to 117801935 10293 - protein coding gene M phase phosphoprotein 6
Tssr2698 8 117794756 to 117794761 5 + TSS region transcription start site region 2698
Cpgi21106 8 117801492 to 117802779 1287 CpG island CpG island 21106
Tssr83111 8 117801903 to 117801949 46 - TSS region transcription start site region 83111
Tssr83112 8 117801962 to 117801973 11 - TSS region transcription start site region 83112
Gm10617 8 117802062 to 117803234 1172 + pseudogene predicted gene 10617
Cpgi21107 8 117806634 to 117806799 165 CpG island CpG island 21107
D8Ertd503e 8 117902039 to 117902248 209 DNA segment DNA segment, Chr 8, ERATO Doi 503, expressed
Tssr79648 8 117920079 to 117920089 10 + TSS region transcription start site region 79648
Cpgi21108 8 117934511 to 117934720 209 CpG island CpG island 21108
Gm39262 8 117944793 to 117948430 3637 - lncRNA gene predicted gene, 39262
Gm25200 8 118120954 to 118121083 129 + snoRNA gene predicted gene, 25200
Cpgi21109 8 118283561 to 118284689 1128 CpG island CpG island 21109
Tssr79649 8 118283588 to 118283602 14 + TSS region transcription start site region 79649
Tssr79650 8 118283607 to 118283618 11 + TSS region transcription start site region 79650
Tssr79651 8 118283623 to 118283633 10 + TSS region transcription start site region 79651
Tssr79652 8 118283653 to 118283664 11 + TSS region transcription start site region 79652
Tssr79653 8 118283719 to 118283738 19 + TSS region transcription start site region 79653
Cdh13 8 118283733 to 119324921 1041188 + protein coding gene cadherin 13
Tssr79654 8 118283744 to 118283767 23 + TSS region transcription start site region 79654
Tssr79655 8 118283789 to 118283803 14 + TSS region transcription start site region 79655
Tssr83113 8 118309056 to 118309060 4 - TSS region transcription start site region 83113
Tssr79656 8 118309403 to 118309424 21 + TSS region transcription start site region 79656