Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:116528459-117458538

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128 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39258 8 116527885 to 116529401 1516 - lncRNA gene predicted gene, 39258
D8Mit186 8 116528649 to 116528783 134 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 186
Tssr83064 8 116529385 to 116529392 7 - TSS region transcription start site region 83064
Tssr83065 8 116529414 to 116529422 8 - TSS region transcription start site region 83065
Tssr83066 8 116529442 to 116529449 7 - TSS region transcription start site region 83066
Tssr79568 8 116537980 to 116537983 3 + TSS region transcription start site region 79568
Tssr83067 8 116571888 to 116571892 4 - TSS region transcription start site region 83067
Tssr83068 8 116573962 to 116573965 3 - TSS region transcription start site region 83068
Cdyl2 8 116574400 to 116732991 158591 - protein coding gene chromodomain protein, Y chromosome-like 2
Gm31367 8 116605918 to 116610520 4602 + lncRNA gene predicted gene, 31367
Tssr79569 8 116605947 to 116605955 8 + TSS region transcription start site region 79569
Tssr83069 8 116616346 to 116616350 4 - TSS region transcription start site region 83069
Tssr83070 8 116673160 to 116673186 26 - TSS region transcription start site region 83070
Tssr83071 8 116677809 to 116677823 14 - TSS region transcription start site region 83071
Tssr83072 8 116677953 to 116677967 14 - TSS region transcription start site region 83072
Tssr83073 8 116708155 to 116708159 4 - TSS region transcription start site region 83073
Tssr83074 8 116711467 to 116711510 43 - TSS region transcription start site region 83074
Tssr83075 8 116713855 to 116713864 9 - TSS region transcription start site region 83075
D8Mit360 8 116721188 to 116721362 174 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 360
Cpgi21088 8 116732017 to 116733801 1784 CpG island CpG island 21088
Tssr83076 8 116732827 to 116732899 72 - TSS region transcription start site region 83076
Tssr83077 8 116733061 to 116733076 15 - TSS region transcription start site region 83077
Tssr83078 8 116733255 to 116733314 59 - TSS region transcription start site region 83078
Tssr83079 8 116733323 to 116733354 31 - TSS region transcription start site region 83079
Gm10620 8 116764144 to 116765479 1335 - pseudogene predicted gene 10620
D8Mit90 8 116778937 to 116779094 157 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 90
4930563M20Rik 8 116781712 to 116801412 19700 - lncRNA gene RIKEN cDNA 4930563M20 gene
Tssr83080 8 116799973 to 116799990 17 - TSS region transcription start site region 83080
Cpgi21089 8 116801295 to 116801770 475 CpG island CpG island 21089
D8Mit118 8 116813044 to 116813169 125 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 118
Gm42045 8 116841972 to 116853185 11213 - lncRNA gene predicted gene, 42045
Cpgi21090 8 116863347 to 116863764 417 CpG island CpG island 21090
Tssr79570 8 116873706 to 116873717 11 + TSS region transcription start site region 79570
Cmc2 8 116888685 to 116921455 32770 - protein coding gene COX assembly mitochondrial protein 2
Tssr83081 8 116894764 to 116894775 11 - TSS region transcription start site region 83081
Cpgi21091 8 116920985 to 116922162 1177 CpG island CpG island 21091
Tssr83082 8 116921378 to 116921392 14 - TSS region transcription start site region 83082
Tssr83083 8 116921408 to 116921451 43 - TSS region transcription start site region 83083
Tssr79571 8 116921715 to 116921733 18 + TSS region transcription start site region 79571
Cenpn 8 116921730 to 116941507 19777 + protein coding gene centromere protein N
Tssr79572 8 116921735 to 116921752 17 + TSS region transcription start site region 79572
Tssr79573 8 116921754 to 116921763 9 + TSS region transcription start site region 79573
Cpgi21092 8 116943147 to 116944368 1221 CpG island CpG island 21092
Tssr79574 8 116943387 to 116943424 37 + TSS region transcription start site region 79574
Atmin 8 116943393 to 116960445 17052 + protein coding gene ATM interactor
Tssr83084 8 116944100 to 116944129 29 - TSS region transcription start site region 83084
Tssr83085 8 116944182 to 116944195 13 - TSS region transcription start site region 83085
Tssr83086 8 116944324 to 116944330 6 - TSS region transcription start site region 83086
Tssr83087 8 116944373 to 116944384 11 - TSS region transcription start site region 83087
1700030J22Rik 8 116969599 to 116978954 9355 - protein coding gene RIKEN cDNA 1700030J22 gene
Cpgi21093 8 116978456 to 116979471 1015 CpG island CpG island 21093
Tssr83088 8 116978882 to 116978906 24 - TSS region transcription start site region 83088
Tssr83089 8 116978908 to 116978997 89 - TSS region transcription start site region 83089
Tssr79575 8 116979084 to 116979109 25 + TSS region transcription start site region 79575
Gcsh 8 116981828 to 116993449 11621 - protein coding gene glycine cleavage system protein H (aminomethyl carrier)
Cpgi21094 8 116992838 to 116993881 1043 CpG island CpG island 21094
Tssr83090 8 116993439 to 116993456 17 - TSS region transcription start site region 83090
Tssr83091 8 116993459 to 116993538 79 - TSS region transcription start site region 83091
Pkd1l2 8 116995679 to 117082449 86770 - protein coding gene polycystic kidney disease 1 like 2
Gm31519 8 117019043 to 117021941 2898 + lncRNA gene predicted gene, 31519
Cpgi21095 8 117028520 to 117028715 195 CpG island CpG island 21095
Gm15395 8 117036497 to 117043639 7142 + antisense lncRNA gene predicted gene 15395
Tssr79576 8 117051034 to 117051050 16 + TSS region transcription start site region 79576
Tssr79577 8 117055428 to 117055471 43 + TSS region transcription start site region 79577
Tssr83092 8 117068159 to 117068207 48 - TSS region transcription start site region 83092
Tssr2696 8 117074883 to 117074895 12 + TSS region transcription start site region 2696
Bco1 8 117095854 to 117133720 37866 + protein coding gene beta-carotene oxygenase 1
Tssr79578 8 117095859 to 117095875 16 + TSS region transcription start site region 79578
Tssr79579 8 117115840 to 117115844 4 + TSS region transcription start site region 79579
Gm20694 8 117125335 to 117125738 403 + pseudogene predicted gene 20694
Cpgi21096 8 117157294 to 117158870 1576 CpG island CpG island 21096
Tssr83093 8 117157785 to 117157803 18 - TSS region transcription start site region 83093
Tssr79580 8 117157950 to 117157967 17 + TSS region transcription start site region 79580
Tssr79581 8 117157972 to 117158035 63 + TSS region transcription start site region 79581
Gan 8 117158135 to 117205186 47051 + protein coding gene giant axonal neuropathy
Tssr83094 8 117158493 to 117158528 35 - TSS region transcription start site region 83094
Fbtq3 8 117238570 to 117238700 130 QTL femoral bone trait QTL 3
D8Mit167 8 117238570 to 117238700 130 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 167
Bmd39 8 117238700 to 32016544 -85222156 QTL bone mineral density 39
Cpgi21097 8 117256077 to 117257668 1591 CpG island CpG island 21097
Tssr79582 8 117256659 to 117256724 65 + TSS region transcription start site region 79582
Tssr79583 8 117256733 to 117256755 22 + TSS region transcription start site region 79583
Tssr79584 8 117256798 to 117256803 5 + TSS region transcription start site region 79584
Tssr79585 8 117256810 to 117256829 19 + TSS region transcription start site region 79585
Tssr79586 8 117256848 to 117256877 29 + TSS region transcription start site region 79586
Cmip 8 117257064 to 117459430 202366 + protein coding gene c-Maf inducing protein
Tssr79587 8 117257082 to 117257107 25 + TSS region transcription start site region 79587
Tssr79588 8 117257136 to 117257147 11 + TSS region transcription start site region 79588
Tssr83095 8 117258027 to 117258031 4 - TSS region transcription start site region 83095
A130010C12Rik 8 117258078 to 117260799 2721 unclassified gene RIKEN cDNA A130010C12 gene
Tssr79589 8 117258102 to 117258103 1 + TSS region transcription start site region 79589
Tssr79590 8 117265904 to 117265909 5 + TSS region transcription start site region 79590
Tssr79591 8 117266073 to 117266091 18 + TSS region transcription start site region 79591
Tssr79592 8 117274675 to 117274709 34 + TSS region transcription start site region 79592
Tssr79593 8 117275083 to 117275097 14 + TSS region transcription start site region 79593
Tssr79594 8 117275117 to 117275132 15 + TSS region transcription start site region 79594
Tssr79595 8 117275137 to 117275174 37 + TSS region transcription start site region 79595
Tssr79596 8 117275197 to 117275215 18 + TSS region transcription start site region 79596
4930572C08Rik 8 117290668 to 117292196 1528 unclassified gene RIKEN cDNA 4930572C08 gene
Tssr79597 8 117302466 to 117302481 15 + TSS region transcription start site region 79597
Tssr79598 8 117307732 to 117307736 4 + TSS region transcription start site region 79598
Tssr79599 8 117328874 to 117328878 4 + TSS region transcription start site region 79599
Tssr79600 8 117330396 to 117330481 85 + TSS region transcription start site region 79600
Tssr79601 8 117340196 to 117340199 3 + TSS region transcription start site region 79601
Tssr79602 8 117340472 to 117340494 22 + TSS region transcription start site region 79602
Tssr79603 8 117340535 to 117340550 15 + TSS region transcription start site region 79603
Tssr79604 8 117342670 to 117342673 3 + TSS region transcription start site region 79604
Tssr2697 8 117343258 to 117343307 49 + TSS region transcription start site region 2697
Tssr83096 8 117343677 to 117343691 14 - TSS region transcription start site region 83096
Slpapn3 8 117357915 to 117357915 0 QTL average percent sleep per night 3
Tssr79605 8 117365040 to 117365054 14 + TSS region transcription start site region 79605
Tssr79606 8 117379348 to 117379385 37 + TSS region transcription start site region 79606
Tssr79607 8 117379389 to 117379404 15 + TSS region transcription start site region 79607
Tssr79608 8 117401165 to 117401183 18 + TSS region transcription start site region 79608
Tssr79609 8 117401370 to 117401384 14 + TSS region transcription start site region 79609
Tssr79610 8 117401426 to 117401482 56 + TSS region transcription start site region 79610
Tssr79611 8 117401551 to 117401585 34 + TSS region transcription start site region 79611
Tssr79612 8 117403822 to 117403858 36 + TSS region transcription start site region 79612
Tssr79613 8 117410652 to 117410654 2 + TSS region transcription start site region 79613
Tssr79614 8 117411056 to 117411059 3 + TSS region transcription start site region 79614
Tssr79615 8 117411305 to 117411322 17 + TSS region transcription start site region 79615
Gm39260 8 117417466 to 117423209 5743 - lncRNA gene predicted gene, 39260
Tssr83097 8 117423088 to 117423125 37 - TSS region transcription start site region 83097
D8Mit368 8 117431548 to 117431660 112 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology-368
Cpgi21098 8 117436572 to 117436890 318 CpG island CpG island 21098
D8Mit154 8 117451460 to 117451603 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 154
Mir7077 8 117453023 to 117453079 56 + miRNA gene microRNA 7077
Tssr79616 8 117456876 to 117456938 62 + TSS region transcription start site region 79616