Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:109612249-109892267

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkd1l3 8 109613993 to 109672592 58599 + protein coding gene polycystic kidney disease 1 like 3
Tssr79361 8 109614228 to 109614239 11 + TSS region transcription start site region 79361
Tssr79362 8 109614417 to 109614421 4 + TSS region transcription start site region 79362
Ist1 8 109671325 to 109693260 21935 - protein coding gene increased sodium tolerance 1 homolog (yeast)
Tssr82853 8 109682193 to 109682208 15 - TSS region transcription start site region 82853
Cpgi21018 8 109692691 to 109693794 1103 CpG island CpG island 21018
Tssr82854 8 109693202 to 109693211 9 - TSS region transcription start site region 82854
Tssr82855 8 109693215 to 109693226 11 - TSS region transcription start site region 82855
Tssr82856 8 109693235 to 109693289 54 - TSS region transcription start site region 82856
Tssr79363 8 109693444 to 109693460 16 + TSS region transcription start site region 79363
Cpgi21019 8 109704918 to 109706493 1575 CpG island CpG island 21019
Tssr79364 8 109705501 to 109705519 18 + TSS region transcription start site region 79364
Zfp821 8 109705546 to 109724932 19386 + protein coding gene zinc finger protein 821
Tssr79365 8 109705578 to 109705636 58 + TSS region transcription start site region 79365
Tssr79366 8 109705640 to 109705666 26 + TSS region transcription start site region 79366
Gm39248 8 109710048 to 109713503 3455 - lncRNA gene predicted gene, 39248
Atxn1l 8 109726451 to 109737739 11288 - protein coding gene ataxin 1-like
Cpgi21020 8 109737099 to 109737927 828 CpG island CpG island 21020
Tssr82857 8 109737714 to 109737786 72 - TSS region transcription start site region 82857
Gm8970 8 109751037 to 109751952 915 - pseudogene predicted gene 8970
Tssr82858 8 109752249 to 109752267 18 - TSS region transcription start site region 82858
Cpgi21021 8 109778353 to 109779613 1260 CpG island CpG island 21021
Tssr79367 8 109778555 to 109778558 3 + TSS region transcription start site region 79367
Tssr79368 8 109778566 to 109778577 11 + TSS region transcription start site region 79368
Ap1g1 8 109778583 to 109864210 85627 + protein coding gene adaptor protein complex AP-1, gamma 1 subunit
Tssr79369 8 109778591 to 109778651 60 + TSS region transcription start site region 79369
Tssr79370 8 109778654 to 109778678 24 + TSS region transcription start site region 79370
Tssr79371 8 109778850 to 109778861 11 + TSS region transcription start site region 79371
Tssr79372 8 109778863 to 109778921 58 + TSS region transcription start site region 79372
Tssr79373 8 109781512 to 109781515 3 + TSS region transcription start site region 79373
D14Sfk6 8 109792460 to 109792644 184 DNA segment DNA segment, Chr 14, Stephen F. Kingsmore 6
Tssr79374 8 109830480 to 109830484 4 + TSS region transcription start site region 79374
Tssr79375 8 109838768 to 109838782 14 + TSS region transcription start site region 79375
Snord71 8 109839312 to 109839375 63 + snoRNA gene small nucleolar RNA, C/D box 71
Gm25321 8 109840588 to 109840689 101 - snRNA gene predicted gene, 25321
A230107O07Rik 8 109845572 to 109847163 1591 unclassified gene RIKEN cDNA A230107O07 gene
D8Mit1009a 8 109854460 to 109854621 161 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1009a
D8Mit1009b 8 109854488 to 109854621 133 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1009b
D8Mit1010 8 109854562 to 109854689 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 1010
Tssr79376 8 109855003 to 109855017 14 + TSS region transcription start site region 79376
Gm17344 8 109859984 to 109868455 8471 - antisense lncRNA gene predicted gene, 17344
Tssr79377 8 109860262 to 109860281 19 + TSS region transcription start site region 79377
Cpgi21022 8 109868099 to 109869595 1496 CpG island CpG island 21022
Tssr82859 8 109868421 to 109868439 18 - TSS region transcription start site region 82859
Tssr79378 8 109868531 to 109868584 53 + TSS region transcription start site region 79378
Phlpp2 8 109868542 to 109944671 76129 + protein coding gene PH domain and leucine rich repeat protein phosphatase 2
Tssr79379 8 109868586 to 109868609 23 + TSS region transcription start site region 79379
D8Mit269 8 109877669 to 109877793 124 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 269