Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:104345550-104736763

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cmtm3 8 104339410 to 104347672 8262 + protein coding gene CKLF-like MARVEL transmembrane domain containing 3
Tssr79059 8 104346953 to 104346995 42 + TSS region transcription start site region 79059
Tssr79060 8 104347459 to 104347472 13 + TSS region transcription start site region 79060
Cmtm4 8 104348191 to 104395807 47616 - protein coding gene CKLF-like MARVEL transmembrane domain containing 4
Gm45877 8 104362602 to 104363668 1066 - sense intronic lncRNA gene predicted gene 45877
Cpgi20900 8 104394959 to 104396318 1359 CpG island CpG island 20900
Tssr82601 8 104395765 to 104395858 93 - TSS region transcription start site region 82601
Tssr82602 8 104395873 to 104395886 13 - TSS region transcription start site region 82602
Dync1li2 8 104417680 to 104443047 25367 - protein coding gene dynein, cytoplasmic 1 light intermediate chain 2
Tssr79061 8 104430724 to 104430727 3 + TSS region transcription start site region 79061
Cpgi20901 8 104436014 to 104436244 230 CpG island CpG island 20901
Tssr82603 8 104437639 to 104437657 18 - TSS region transcription start site region 82603
Gm45731 8 104438260 to 104439462 1202 + unclassified gene predicted gene 45731
Tssr82604 8 104441608 to 104441609 1 - TSS region transcription start site region 82604
Cpgi20902 8 104442044 to 104443145 1101 CpG island CpG island 20902
K230015D01Rik 8 104442271 to 104443786 1515 + antisense lncRNA gene RIKEN cDNA K230015D01 gene
Tssr82605 8 104442804 to 104442836 32 - TSS region transcription start site region 82605
Tssr82606 8 104442902 to 104442920 18 - TSS region transcription start site region 82606
Tssr2675 8 104442928 to 104442935 7 - TSS region transcription start site region 2675
Tssr82607 8 104442944 to 104442955 11 - TSS region transcription start site region 82607
Tssr82608 8 104442971 to 104442976 5 - TSS region transcription start site region 82608
Tssr82609 8 104443001 to 104443025 24 - TSS region transcription start site region 82609
Tssr82610 8 104443033 to 104443044 11 - TSS region transcription start site region 82610
Terb1 8 104446718 to 104509887 63169 - protein coding gene telomere repeat binding bouquet formation protein 1
Gm22148 8 104507902 to 104508008 106 + snRNA gene predicted gene, 22148
Cpgi20903 8 104509072 to 104510072 1000 CpG island CpG island 20903
Tssr82611 8 104509874 to 104509894 20 - TSS region transcription start site region 82611
Nae1 8 104511028 to 104534637 23609 - protein coding gene NEDD8 activating enzyme E1 subunit 1
Cpgi20904 8 104534054 to 104534798 744 CpG island CpG island 20904
Tssr82612 8 104534568 to 104534624 56 - TSS region transcription start site region 82612
Tssr82613 8 104534630 to 104534646 16 - TSS region transcription start site region 82613
Car7 8 104534694 to 104550347 15653 + protein coding gene carbonic anhydrase 7
Tssr79062 8 104535053 to 104535081 28 + TSS region transcription start site region 79062
Cpgi20905 8 104540550 to 104541763 1213 CpG island CpG island 20905
Tssr79063 8 104540770 to 104540784 14 + TSS region transcription start site region 79063
Tssr79064 8 104540800 to 104540816 16 + TSS region transcription start site region 79064
Tssr79065 8 104540822 to 104540835 13 + TSS region transcription start site region 79065
Cpgi20906 8 104542085 to 104542383 298 CpG island CpG island 20906
Tssr82614 8 104549988 to 104550014 26 - TSS region transcription start site region 82614
Gm45843 8 104551907 to 104556987 5080 - lincRNA gene predicted gene 45843
Gm6825 8 104577591 to 104577796 205 - pseudogene predicted gene 6825
Cpgi20907 8 104591250 to 104591948 698 CpG island CpG island 20907
Tssr79066 8 104591440 to 104591454 14 + TSS region transcription start site region 79066
Tssr79067 8 104591464 to 104591505 41 + TSS region transcription start site region 79067
Pdp2 8 104591468 to 104599026 7558 + protein coding gene pyruvate dehyrogenase phosphatase catalytic subunit 2
Tssr79068 8 104591510 to 104591520 10 + TSS region transcription start site region 79068
Tssr79069 8 104595356 to 104595361 5 + TSS region transcription start site region 79069
Cdh16 8 104601915 to 104624396 22481 - protein coding gene cadherin 16
Tssr82615 8 104609341 to 104609362 21 - TSS region transcription start site region 82615
Tssr82616 8 104609364 to 104609375 11 - TSS region transcription start site region 82616
Tssr82617 8 104623901 to 104623913 12 - TSS region transcription start site region 82617
Tssr82618 8 104624188 to 104624203 15 - TSS region transcription start site region 82618
Tssr82619 8 104624210 to 104624239 29 - TSS region transcription start site region 82619
Tssr82620 8 104624249 to 104624262 13 - TSS region transcription start site region 82620
Tssr82621 8 104624266 to 104624306 40 - TSS region transcription start site region 82621
Tssr79070 8 104624511 to 104624518 7 + TSS region transcription start site region 79070
Tssr79071 8 104624522 to 104624533 11 + TSS region transcription start site region 79071
Tssr79072 8 104624566 to 104624576 10 + TSS region transcription start site region 79072
Rrad 8 104628070 to 104631327 3257 - protein coding gene Ras-related associated with diabetes
Cpgi20908 8 104630428 to 104631455 1027 CpG island CpG island 20908
Tssr82622 8 104631281 to 104631295 14 - TSS region transcription start site region 82622
Tssr82623 8 104631312 to 104631319 7 - TSS region transcription start site region 82623
Gm33023 8 104631400 to 104635841 4441 + antisense lncRNA gene predicted gene, 33023
Ciao2b 8 104639839 to 104641728 1889 - protein coding gene cytosolic iron-sulfur assembly component 2B
Cpgi20909 8 104640792 to 104642297 1505 CpG island CpG island 20909
Tssr82624 8 104641666 to 104641736 70 - TSS region transcription start site region 82624
1700082M22Rik 8 104641807 to 104658558 16751 + antisense lncRNA gene RIKEN cDNA 1700082M22 gene
Tlm 8 104661827 to 104665081 3254 unclassified gene T lymphoma oncogene
Gm7208 8 104675318 to 104681600 6282 - pseudogene predicted gene 7208
Gm5159 8 104701705 to 104707621 5916 - pseudogene predicted gene 5159
Tssr82625 8 104708269 to 104708272 3 - TSS region transcription start site region 82625
Gm44328 8 104709372 to 104709446 74 - miRNA gene predicted gene, 44328
9230110F11Rik 8 104711249 to 104718260 7011 + unclassified gene RIKEN cDNA 9230110F11 gene
Tssr79073 8 104733997 to 104734024 27 + TSS region transcription start site region 79073
Ces2a 8 104734003 to 104741634 7631 + protein coding gene carboxylesterase 2A