Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:3402788-3539974

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacng8 7 3394042 to 3415605 21563 + protein coding gene calcium channel, voltage-dependent, gamma subunit 8
Cpgi18212 7 3411103 to 3411450 347 CpG island CpG island 18212
Tssr64270 7 3411472 to 3411515 43 + TSS region transcription start site region 64270
Cpgi18213 7 3411925 to 3412359 434 CpG island CpG island 18213
Cpgi18214 7 3414649 to 3414994 345 CpG island CpG island 18214
Gm23450 7 3415066 to 3415156 90 + miRNA gene predicted gene, 23450
3300002P13Rik 7 3421665 to 3423445 1780 - lincRNA gene RIKEN cDNA 3300002P13 gene
Cpgi18215 7 3423519 to 3423810 291 CpG island CpG island 18215
Tssr64271 7 3423589 to 3423594 5 + TSS region transcription start site region 64271
Tssr64272 7 3423600 to 3423611 11 + TSS region transcription start site region 64272
Tssr64273 7 3423612 to 3423654 42 + TSS region transcription start site region 64273
Cacng6 7 3424195 to 3435667 11472 + protein coding gene calcium channel, voltage-dependent, gamma subunit 6
Gm35037 7 3452310 to 3475833 23523 + lincRNA gene predicted gene, 35037
Tssr64274 7 3455534 to 3455538 4 + TSS region transcription start site region 64274
Sle3 7 3463212 to 87493512 84030300 QTL systemic lupus erythmatosus susceptibility 3
D7Mit178 7 3463212 to 3463409 197 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 178
repro13 7 3463212 to 37142942 33679730 heritable phenotypic marker reproductive mutant 13, JAX Reproductive Mutagenesis Program
Sle20 7 3463212 to 3463409 197 QTL systematic lupus erythematosus susceptibility 20
Vent3 7 3463212 to 3463409 197 QTL ventricular size 3
Gm45920 7 3467788 to 3474974 7186 - lncRNA gene predicted gene, 45920
Vstm1 7 3468069 to 3482716 14647 protein coding gene V-set and transmembrane domain containing 1
Tarm1 7 3486500 to 3502624 16124 - protein coding gene T cell-interacting, activating receptor on myeloid cells 1
Gm44165 7 3489611 to 3491079 1468 - unclassified gene predicted gene, 44165
Tssr2067 7 3497804 to 3497811 7 - TSS region transcription start site region 2067
Tssr70406 7 3502502 to 3502510 8 - TSS region transcription start site region 70406
Tssr70407 7 3502542 to 3502578 36 - TSS region transcription start site region 70407
Tssr70408 7 3502587 to 3502592 5 - TSS region transcription start site region 70408
Tssr70409 7 3502617 to 3502629 12 - TSS region transcription start site region 70409
Tssr2068 7 3502755 to 3502766 11 - TSS region transcription start site region 2068
nmf206 7 30333196 to 3463212 -26869984 heritable phenotypic marker neuroscience mutagenesis facility, 206