Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:124688837-124748857

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lpcat3 6 124663027 to 124704418 41391 + protein coding gene lysophosphatidylcholine acyltransferase 3
Tssr58837 6 124701513 to 124701527 14 + TSS region transcription start site region 58837
Tssr58838 6 124701623 to 124701637 14 + TSS region transcription start site region 58838
Emg1 6 124704370 to 124712178 7808 - protein coding gene EMG1 N1-specific pseudouridine methyltransferase
Tssr63098 6 124709052 to 124709057 5 - TSS region transcription start site region 63098
Cpgi17963 6 124711900 to 124712934 1034 CpG island CpG island 17963
Tssr63099 6 124712038 to 124712071 33 - TSS region transcription start site region 63099
Tssr63100 6 124712131 to 124712171 40 - TSS region transcription start site region 63100
Tssr58839 6 124712279 to 124712353 74 + TSS region transcription start site region 58839
Phb2 6 124712336 to 124716950 4614 + protein coding gene prohibitin 2
Tssr58840 6 124713099 to 124713117 18 + TSS region transcription start site region 58840
Tssr58841 6 124714006 to 124714031 25 + TSS region transcription start site region 58841
Tssr58842 6 124715230 to 124715233 3 + TSS region transcription start site region 58842
Gm23547 6 124715232 to 124715502 270 + snoRNA gene predicted gene, 23547
Gm15884 6 124715573 to 124718831 3258 - antisense lncRNA gene predicted gene 15884
Gm29008 6 124717647 to 124717944 297 - sense intronic lncRNA gene predicted gene 29008
Mirc13 6 124717914 to 124718390 476 complex/cluster/region microRNA cluster 13, including Mir141 through Mir200c
Mir141 6 124717914 to 124717985 71 - miRNA gene microRNA 141
Mir200c 6 124718322 to 124718390 68 - miRNA gene microRNA 200c
Cpgi17964 6 124718643 to 124718822 179 CpG island CpG island 17964
Tssr63101 6 124718808 to 124718835 27 - TSS region transcription start site region 63101
Tssr63102 6 124718837 to 124718857 20 - TSS region transcription start site region 63102
Ptpn6 6 124720707 to 124738709 18002 - protein coding gene protein tyrosine phosphatase, non-receptor type 6
Tssr63103 6 124721906 to 124721917 11 - TSS region transcription start site region 63103
Tssr2008 6 124722119 to 124722135 16 - TSS region transcription start site region 2008
Tssr2009 6 124722149 to 124722160 11 - TSS region transcription start site region 2009
2010010I01Rik 6 124722616 to 124724027 1411 unclassified gene RIKEN cDNA 2010010I01 gene
Tssr63104 6 124723001 to 124723003 2 - TSS region transcription start site region 63104
Tssr63105 6 124723614 to 124723654 40 - TSS region transcription start site region 63105
Tssr63106 6 124724590 to 124724604 14 - TSS region transcription start site region 63106
Tssr63107 6 124727113 to 124727124 11 - TSS region transcription start site region 63107
Tssr63108 6 124727212 to 124727216 4 - TSS region transcription start site region 63108
Tssr63109 6 124727274 to 124727287 13 - TSS region transcription start site region 63109
Tssr63110 6 124728445 to 124728454 9 - TSS region transcription start site region 63110
Tssr63111 6 124729939 to 124729954 15 - TSS region transcription start site region 63111
Tssr63112 6 124729980 to 124729991 11 - TSS region transcription start site region 63112
Gm20531 6 124732168 to 124738040 5872 + antisense lncRNA gene predicted gene 20531
Tssr63113 6 124732386 to 124732433 47 - TSS region transcription start site region 63113
Tssr63114 6 124733021 to 124733032 11 - TSS region transcription start site region 63114
Tssr63115 6 124733067 to 124733120 53 - TSS region transcription start site region 63115
Tssr63116 6 124733121 to 124733145 24 - TSS region transcription start site region 63116
Tssr63117 6 124733176 to 124733187 11 - TSS region transcription start site region 63117
Tssr63118 6 124738579 to 124738591 12 - TSS region transcription start site region 63118
Tssr63119 6 124738596 to 124738630 34 - TSS region transcription start site region 63119
Tssr63120 6 124738653 to 124738678 25 - TSS region transcription start site region 63120
Tssr63121 6 124738794 to 124738826 32 - TSS region transcription start site region 63121
Tssr63122 6 124738850 to 124738877 27 - TSS region transcription start site region 63122
Grcc10 6 124739183 to 124741079 1896 - protein coding gene gene rich cluster, C10 gene
Tssr58843 6 124739184 to 124739232 48 + TSS region transcription start site region 58843
Gm45234 6 124739189 to 124756021 16832 - protein coding gene predicted gene 45234
Cpgi17965 6 124740479 to 124741288 809 CpG island CpG island 17965
Tssr63123 6 124740984 to 124741093 109 - TSS region transcription start site region 63123
Tssr63124 6 124741101 to 124741118 17 - TSS region transcription start site region 63124
Tssr63125 6 124741119 to 124741128 9 - TSS region transcription start site region 63125
Tssr63126 6 124741183 to 124741193 10 - TSS region transcription start site region 63126
Rnu7 6 124741225 to 124741286 61 - snRNA gene U7 small nuclear RNA
Tssr63127 6 124741278 to 124741289 11 - TSS region transcription start site region 63127
Tssr63128 6 124741378 to 124741402 24 - TSS region transcription start site region 63128
Atn1 6 124742544 to 124756487 13943 - protein coding gene atrophin 1
Tssr63129 6 124742643 to 124742670 27 - TSS region transcription start site region 63129
Tssr63130 6 124742675 to 124742729 54 - TSS region transcription start site region 63130
Tssr58844 6 124743522 to 124743525 3 + TSS region transcription start site region 58844
Cpgi17966 6 124744896 to 124746547 1651 CpG island CpG island 17966
Tssr63131 6 124745600 to 124745619 19 - TSS region transcription start site region 63131
Tssr63132 6 124746687 to 124746704 17 - TSS region transcription start site region 63132
Tssr63133 6 124746858 to 124746878 20 - TSS region transcription start site region 63133
Tssr63134 6 124746941 to 124746958 17 - TSS region transcription start site region 63134
Tssr63135 6 124747123 to 124747163 40 - TSS region transcription start site region 63135
Tssr63136 6 124747192 to 124747220 28 - TSS region transcription start site region 63136
Tssr63137 6 124747402 to 124747428 26 - TSS region transcription start site region 63137
Tssr63138 6 124747969 to 124747994 25 - TSS region transcription start site region 63138