Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:115344362-115745096

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17870 6 115360753 to 115362239 1486 CpG island CpG island 17870
Tssr58297 6 115360854 to 115360881 27 + TSS region transcription start site region 58297
Tssr58298 6 115360890 to 115360912 22 + TSS region transcription start site region 58298
Tssr58299 6 115360950 to 115360962 12 + TSS region transcription start site region 58299
Pparg 6 115360951 to 115490399 129448 + protein coding gene peroxisome proliferator activated receptor gamma
Berr6 6 115360951 to 115578340 217389 QTL berghei resistance locus 6
Tssr58300 6 115360978 to 115360989 11 + TSS region transcription start site region 58300
Tssr58301 6 115361012 to 115361047 35 + TSS region transcription start site region 58301
Tssr58302 6 115361065 to 115361101 36 + TSS region transcription start site region 58302
Tssr58303 6 115361114 to 115361129 15 + TSS region transcription start site region 58303
Tssr58304 6 115361214 to 115361223 9 + TSS region transcription start site region 58304
Tssr58305 6 115361252 to 115361280 28 + TSS region transcription start site region 58305
Tssr58306 6 115361290 to 115361299 9 + TSS region transcription start site region 58306
Tssr62509 6 115362223 to 115362230 7 - TSS region transcription start site region 62509
Tssr58307 6 115362311 to 115362322 11 + TSS region transcription start site region 58307
Tssr58308 6 115362343 to 115362360 17 + TSS region transcription start site region 58308
Tssr58309 6 115399234 to 115399264 30 + TSS region transcription start site region 58309
Tssr58310 6 115421998 to 115422004 6 + TSS region transcription start site region 58310
Tssr58311 6 115422040 to 115422067 27 + TSS region transcription start site region 58311
Tssr58312 6 115422081 to 115422103 22 + TSS region transcription start site region 58312
Tssr58313 6 115422121 to 115422134 13 + TSS region transcription start site region 58313
Tssr58314 6 115441523 to 115441534 11 + TSS region transcription start site region 58314
Gm44079 6 115451815 to 115464990 13175 - antisense lncRNA gene predicted gene, 44079
D6Oda17 6 115465109 to 115465296 187 DNA segment DNA segment, Chr 6, Sen-ichi Oda 17
Tssr62510 6 115484485 to 115484488 3 - TSS region transcription start site region 62510
Tssr62511 6 115488851 to 115488861 10 - TSS region transcription start site region 62511
Gm36301 6 115505886 to 115519525 13639 - lncRNA gene predicted gene, 36301
Tssr1969 6 115522104 to 115522106 2 + TSS region transcription start site region 1969
Gm36355 6 115529131 to 115536900 7769 - lincRNA gene predicted gene, 36355
Tssr62512 6 115536969 to 115536998 29 - TSS region transcription start site region 62512
Cpgi17871 6 115544362 to 115545096 734 CpG island CpG island 17871
Tssr58315 6 115544672 to 115544712 40 + TSS region transcription start site region 58315
Tsen2 6 115544703 to 115578340 33637 + protein coding gene tRNA splicing endonuclease subunit 2
Tssr58316 6 115581098 to 115581109 11 + TSS region transcription start site region 58316
Mkrn2os 6 115583547 to 115592576 9029 - protein coding gene makorin, ring finger protein 2, opposite strand
Tssr62513 6 115592493 to 115592503 10 - TSS region transcription start site region 62513
Tssr62514 6 115592510 to 115592529 19 - TSS region transcription start site region 62514
Tssr62515 6 115592530 to 115592537 7 - TSS region transcription start site region 62515
Tssr62516 6 115592543 to 115592570 27 - TSS region transcription start site region 62516
Tssr62517 6 115592571 to 115592599 28 - TSS region transcription start site region 62517
Cpgi17872 6 115601704 to 115602445 741 CpG island CpG island 17872
Tssr58317 6 115601907 to 115601940 33 + TSS region transcription start site region 58317
Mkrn2 6 115601938 to 115618670 16732 + protein coding gene makorin, ring finger protein, 2
Tssr58318 6 115601951 to 115601979 28 + TSS region transcription start site region 58318
Gm44157 6 115608170 to 115608579 409 + unclassified gene predicted gene, 44157
Raf1 6 115618573 to 115676635 58062 - protein coding gene v-raf-leukemia viral oncogene 1
Gm14335 6 115638250 to 115639059 809 - pseudogene predicted gene 14335
Tssr62518 6 115639184 to 115639206 22 - TSS region transcription start site region 62518
Tssr62519 6 115644527 to 115644558 31 - TSS region transcription start site region 62519
Tssr62520 6 115653995 to 115654002 7 - TSS region transcription start site region 62520
Tssr62521 6 115661731 to 115661749 18 - TSS region transcription start site region 62521
Tssr58319 6 115666952 to 115666970 18 + TSS region transcription start site region 58319
Cpgi17873 6 115675680 to 115677067 1387 CpG island CpG island 17873
Tssr62522 6 115675871 to 115675887 16 - TSS region transcription start site region 62522
Tssr58320 6 115675944 to 115675956 12 + TSS region transcription start site region 58320
D830050J10Rik 6 115675968 to 115677780 1812 + bidirectional promoter lncRNA gene RIKEN cDNA D830050J10 gene
Tssr58321 6 115675983 to 115676004 21 + TSS region transcription start site region 58321
Tssr62523 6 115676472 to 115676578 106 - TSS region transcription start site region 62523
Tssr62524 6 115676601 to 115676618 17 - TSS region transcription start site region 62524
Tssr62525 6 115676623 to 115676642 19 - TSS region transcription start site region 62525
Tssr58322 6 115676714 to 115676754 40 + TSS region transcription start site region 58322
Tssr62526 6 115685450 to 115685498 48 - TSS region transcription start site region 62526
Tssr1970 6 115687862 to 115687864 2 + TSS region transcription start site region 1970
Gm38879 6 115701150 to 115705539 4389 + lncRNA gene predicted gene, 38879
Lith6 6 115717516 to 115717715 199 QTL lithogenic gene 6
Bhr5 6 115717516 to 132601187 16883671 QTL bronchial hyperresponsiveness 5
D6Mit62a 6 115717516 to 115717715 199 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62a
D6Mit62b 6 115717516 to 115717805 289 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 62b
Gm24008 6 115723695 to 115723832 137 - snoRNA gene predicted gene, 24008
Tmem40 6 115729131 to 115762410 33279 - protein coding gene transmembrane protein 40
Tssr62527 6 115731077 to 115731090 13 - TSS region transcription start site region 62527
Tssr62528 6 115731098 to 115731115 17 - TSS region transcription start site region 62528
Tssr58323 6 115731962 to 115731976 14 + TSS region transcription start site region 58323