Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:5407328-5727757

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr45087 5 5420057 to 5420069 12 + TSS region transcription start site region 45087
Tssr50048 5 5420244 to 5420262 18 - TSS region transcription start site region 50048
Tssr1416 5 5420267 to 5420320 53 - TSS region transcription start site region 1416
Tssr45088 5 5421719 to 5421722 3 + TSS region transcription start site region 45088
1700015F17Rik 5 5437827 to 5479143 41316 - protein coding gene RIKEN cDNA 1700015F17 gene
Tssr50049 5 5479040 to 5479060 20 - TSS region transcription start site region 50049
Tssr50050 5 5479063 to 5479075 12 - TSS region transcription start site region 50050
Tssr50051 5 5479077 to 5479107 30 - TSS region transcription start site region 50051
Tssr50052 5 5479120 to 5479136 16 - TSS region transcription start site region 50052
Gm30325 5 5479160 to 5494070 14910 + lncRNA gene predicted gene, 30325
Tssr45089 5 5479177 to 5479189 12 + TSS region transcription start site region 45089
Tssr45090 5 5481551 to 5481554 3 + TSS region transcription start site region 45090
Tssr45091 5 5504816 to 5504824 8 + TSS region transcription start site region 45091
Cldn12 5 5505015 to 5514976 9961 - protein coding gene claudin 12
Cpgi15519 5 5508138 to 5508377 239 CpG island CpG island 15519
Cpgi15520 5 5514093 to 5515030 937 CpG island CpG island 15520
Tssr50053 5 5514808 to 5514830 22 - TSS region transcription start site region 50053
Tssr50054 5 5514836 to 5514858 22 - TSS region transcription start site region 50054
Tssr50055 5 5514877 to 5514891 14 - TSS region transcription start site region 50055
Tssr50056 5 5514906 to 5514918 12 - TSS region transcription start site region 50056
Gtpbp10 5 5537454 to 5559538 22084 - protein coding gene GTP-binding protein 10 (putative)
Cpgi15521 5 5559176 to 5559804 628 CpG island CpG island 15521
Tssr50057 5 5559501 to 5559517 16 - TSS region transcription start site region 50057
Tssr50058 5 5559521 to 5559545 24 - TSS region transcription start site region 50058
Gm30652 5 5567328 to 5567757 429 + pseudogene predicted gene, 30652
Gm8773 5 5573799 to 5576203 2404 + lincRNA gene predicted gene 8773
Cpgi15522 5 5573814 to 5574328 514 CpG island CpG island 15522
Tssr45092 5 5573994 to 5574013 19 + TSS region transcription start site region 45092
Cfap69 5 5579278 to 5664239 84961 - protein coding gene cilia and flagella associated protein 69
n-TUtca1 5 5627681 to 5627751 70 + tRNA gene nuclear encoded tRNA selenocysteine 1 (anticodon TCA)
Tssr1417 5 5644794 to 5644795 1 + TSS region transcription start site region 1417
Tssr50059 5 5663207 to 5663221 14 - TSS region transcription start site region 50059
Tssr50060 5 5663263 to 5663294 31 - TSS region transcription start site region 50060
Cpgi15523 5 5663755 to 5664386 631 CpG island CpG island 15523
Tssr50061 5 5664176 to 5664181 5 - TSS region transcription start site region 50061
Tssr50062 5 5664183 to 5664192 9 - TSS region transcription start site region 50062
Tssr50063 5 5664196 to 5664253 57 - TSS region transcription start site region 50063
Gm40262 5 5664289 to 5716533 52244 + lncRNA gene predicted gene, 40262
Steap2 5 5664829 to 5694568 29739 - protein coding gene six transmembrane epithelial antigen of prostate 2
D5Mit417 5 5692220 to 5692365 145 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 417
Cpgi15524 5 5693614 to 5694706 1092 CpG island CpG island 15524
Tssr50064 5 5694024 to 5694109 85 - TSS region transcription start site region 50064
Tssr50065 5 5694269 to 5694312 43 - TSS region transcription start site region 50065
Tssr50066 5 5694436 to 5694447 11 - TSS region transcription start site region 50066
Tssr50067 5 5694480 to 5694491 11 - TSS region transcription start site region 50067
Tssr50068 5 5694499 to 5694539 40 - TSS region transcription start site region 50068
Tssr50069 5 5694559 to 5694581 22 - TSS region transcription start site region 50069
Gm43219 5 5696858 to 5698794 1936 + unclassified gene predicted gene 43219