Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:3803576-4405010

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15513 5 3802145 to 3803802 1657 CpG island CpG island 15513
Krit1 5 3803165 to 3844515 41350 + protein coding gene KRIT1, ankyrin repeat containing
Tssr45068 5 3806058 to 3806062 4 + TSS region transcription start site region 45068
Cpgi15514 5 3844945 to 3845449 504 CpG island CpG island 15514
Tssr50000 5 3845017 to 3845050 33 - TSS region transcription start site region 50000
Tssr45069 5 3845171 to 3845192 21 + TSS region transcription start site region 45069
Lrrd1 5 3845173 to 3866596 21423 + protein coding gene leucine rich repeats and death domain containing 1
Tssr45070 5 3845195 to 3845202 7 + TSS region transcription start site region 45070
Rps4x-ps 5 3875362 to 3876154 792 + pseudogene Rps4x retrotransposed pseudogene
Mterf1a 5 3890581 to 3893933 3352 - protein coding gene mitochondrial transcription termination factor 1a
Tssr45071 5 3909290 to 3909299 9 + TSS region transcription start site region 45071
Tssr45072 5 3909310 to 3909321 11 + TSS region transcription start site region 45072
Tssr1415 5 3927533 to 3927544 11 + TSS region transcription start site region 1415
Tssr45073 5 3927821 to 3927843 22 + TSS region transcription start site region 45073
Akap9 5 3927827 to 4080204 152377 + protein coding gene A kinase (PRKA) anchor protein (yotiao) 9
Tssr45074 5 3927857 to 3927888 31 + TSS region transcription start site region 45074
Cpgi15515 5 3927864 to 3928991 1127 CpG island CpG island 15515
Tssr45075 5 3928033 to 3928103 70 + TSS region transcription start site region 45075
Tssr45076 5 3928267 to 3928300 33 + TSS region transcription start site region 45076
Tssr45077 5 3936518 to 3936522 4 + TSS region transcription start site region 45077
Tssr45078 5 3957736 to 3957754 18 + TSS region transcription start site region 45078
Tssr45079 5 3981382 to 3981386 4 + TSS region transcription start site region 45079
Wdr46-ps 5 3989005 to 3990705 1700 + pseudogene Wdr46 retrotransposed pseudogene
Tssr45080 5 3995033 to 3995035 2 + TSS region transcription start site region 45080
Tssr45081 5 4005314 to 4005336 22 + TSS region transcription start site region 45081
Tssr45082 5 4023304 to 4023318 14 + TSS region transcription start site region 45082
Tssr45083 5 4023343 to 4023357 14 + TSS region transcription start site region 45083
Tssr45084 5 4038983 to 4039001 18 + TSS region transcription start site region 45084
Gm40260 5 4073414 to 4077829 4415 - lncRNA gene predicted gene, 40260
Gm43031 5 4073571 to 4075457 1886 + sense intronic lncRNA gene predicted gene 43031
Cyp51 5 4081145 to 4104746 23601 - protein coding gene cytochrome P450, family 51
Cpgi15516 5 4103576 to 4105010 1434 CpG island CpG island 15516
Tssr50001 5 4104391 to 4104443 52 - TSS region transcription start site region 50001
Tssr50002 5 4104447 to 4104462 15 - TSS region transcription start site region 50002
Tssr50003 5 4104483 to 4104492 9 - TSS region transcription start site region 50003
Tssr50004 5 4104598 to 4104624 26 - TSS region transcription start site region 50004
Tssr50005 5 4104631 to 4104642 11 - TSS region transcription start site region 50005
Tssr50006 5 4104654 to 4104792 138 - TSS region transcription start site region 50006
Tssr50007 5 4115094 to 4115113 19 - TSS region transcription start site region 50007
Mterf1b 5 4192367 to 4197651 5284 + protein coding gene mitochondrial transcription termination factor 1b
Pbwg14 5 4223455 to 4223552 97 QTL postnatal body weight growth 14
D5Mit345 5 4223455 to 4223552 97 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 345
D5Mit193 5 4232826 to 4232961 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 193
D5Mit331 5 4246959 to 4247065 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 331
Gm40261 5 4273277 to 4317978 44701 + lncRNA gene predicted gene, 40261
Tssr45085 5 4333448 to 4333452 4 + TSS region transcription start site region 45085
Tssr45086 5 4344708 to 4344713 5 + TSS region transcription start site region 45086