MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:3565791-3626889

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Fam133b	5	3543833 to 3570238	26405	+	protein coding gene	family with sequence similarity 133, member B
Tssr1413	5	3571560 to 3571564	4	+	TSS region	transcription start site region 1413
Tssr45056	5	3571572 to 3571580	8	+	TSS region	transcription start site region 45056
Tssr45057	5	3571590 to 3571610	20	+	TSS region	transcription start site region 45057
Tssr45058	5	3571664 to 3571671	7	+	TSS region	transcription start site region 45058
Tssr45059	5	3571676 to 3571692	16	+	TSS region	transcription start site region 45059
1700109H08Rik	5	3571716 to 3584341	12625	+	protein coding gene	RIKEN cDNA 1700109H08 gene
4833441D16Rik	5	3573053 to 3573546	493		unclassified gene	RIKEN cDNA 4833441D16 gene
Tssr45060	5	3578207 to 3578223	16	+	TSS region	transcription start site region 45060
Rbm48	5	3583978 to 3596547	12569	-	protein coding gene	RNA binding motif protein 48
2510017J16Rik	5	3585112 to 3586374	1262	+	antisense lncRNA gene	RIKEN cDNA 2510017J16 gene
Cpgi15510	5	3595791 to 3596889	1098		CpG island	CpG island 15510
Pex1	5	3596066 to 3637230	41164	+	protein coding gene	peroxisomal biogenesis factor 1
Tssr49988	5	3596071 to 3596118	47	-	TSS region	transcription start site region 49988
Tssr45061	5	3596204 to 3596256	52	+	TSS region	transcription start site region 45061
Tssr45062	5	3596306 to 3596393	87	+	TSS region	transcription start site region 45062
Tssr49989	5	3596540 to 3596579	39	-	TSS region	transcription start site region 49989
Gm43825	5	3624630 to 3625363	733	-	antisense lncRNA gene	predicted gene 43825