Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:3396676-3746692

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdk6 5 3343893 to 3531008 187115 + protein coding gene cyclin-dependent kinase 6
Gm29868 5 3393492 to 3435896 42404 - lncRNA gene predicted gene, 29868
Tssr49984 5 3461109 to 3461113 4 - TSS region transcription start site region 49984
Gm17590 5 3472861 to 3480873 8012 - antisense lncRNA gene predicted gene, 17590
Tssr45040 5 3474943 to 3474956 13 + TSS region transcription start site region 45040
Tssr45041 5 3479707 to 3479724 17 + TSS region transcription start site region 45041
Tssr49985 5 3480863 to 3480884 21 - TSS region transcription start site region 49985
Tssr45042 5 3494611 to 3494651 40 + TSS region transcription start site region 45042
Tssr1411 5 3494921 to 3494934 13 + TSS region transcription start site region 1411
Tssr45043 5 3497841 to 3497877 36 + TSS region transcription start site region 45043
Gm42435 5 3498625 to 3500072 1447 - antisense lncRNA gene predicted gene 42435
Tssr49986 5 3501654 to 3501664 10 - TSS region transcription start site region 49986
Tssr1412 5 3501699 to 3501710 11 - TSS region transcription start site region 1412
Tssr45044 5 3501997 to 3502008 11 + TSS region transcription start site region 45044
Tssr45045 5 3502045 to 3502053 8 + TSS region transcription start site region 45045
Tssr49987 5 3502574 to 3502588 14 - TSS region transcription start site region 49987
Tssr45046 5 3502804 to 3502835 31 + TSS region transcription start site region 45046
Tssr45047 5 3515189 to 3515238 49 + TSS region transcription start site region 45047
Tssr45048 5 3521581 to 3521601 20 + TSS region transcription start site region 45048
Tssr45049 5 3522260 to 3522265 5 + TSS region transcription start site region 45049
Tssr45050 5 3527058 to 3527093 35 + TSS region transcription start site region 45050
D5Mit69 5 3527185 to 3527321 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 69
Cpgi15509 5 3543564 to 3544433 869 CpG island CpG island 15509
Tssr45051 5 3543812 to 3543853 41 + TSS region transcription start site region 45051
Fam133b 5 3543833 to 3570238 26405 + protein coding gene family with sequence similarity 133, member B
Tssr45052 5 3543862 to 3543884 22 + TSS region transcription start site region 45052
Gm43017 5 3544037 to 3544788 751 + sense intronic lncRNA gene predicted gene 43017
Tssr45053 5 3544082 to 3544112 30 + TSS region transcription start site region 45053
Tssr45054 5 3554670 to 3554684 14 + TSS region transcription start site region 45054
Tssr45055 5 3557740 to 3557753 13 + TSS region transcription start site region 45055
n-R5s169 5 3561154 to 3561273 119 + rRNA gene nuclear encoded rRNA 5S 169
Tssr1413 5 3571560 to 3571564 4 + TSS region transcription start site region 1413
Tssr45056 5 3571572 to 3571580 8 + TSS region transcription start site region 45056
Tssr45057 5 3571590 to 3571610 20 + TSS region transcription start site region 45057
Tssr45058 5 3571664 to 3571671 7 + TSS region transcription start site region 45058
Tssr45059 5 3571676 to 3571692 16 + TSS region transcription start site region 45059
1700109H08Rik 5 3571716 to 3584341 12625 + protein coding gene RIKEN cDNA 1700109H08 gene
4833441D16Rik 5 3573053 to 3573546 493 unclassified gene RIKEN cDNA 4833441D16 gene
Tssr45060 5 3578207 to 3578223 16 + TSS region transcription start site region 45060
Rbm48 5 3583978 to 3596547 12569 - protein coding gene RNA binding motif protein 48
2510017J16Rik 5 3585112 to 3586374 1262 + antisense lncRNA gene RIKEN cDNA 2510017J16 gene
Cpgi15510 5 3595791 to 3596889 1098 CpG island CpG island 15510
Pex1 5 3596066 to 3637230 41164 + protein coding gene peroxisomal biogenesis factor 1
Tssr49988 5 3596071 to 3596118 47 - TSS region transcription start site region 49988
Tssr45061 5 3596204 to 3596256 52 + TSS region transcription start site region 45061
Tssr45062 5 3596306 to 3596393 87 + TSS region transcription start site region 45062
Tssr49989 5 3596540 to 3596579 39 - TSS region transcription start site region 49989
Gm43825 5 3624630 to 3625363 733 - antisense lncRNA gene predicted gene 43825
4833413G10Rik 5 3629777 to 3631722 1945 - antisense lncRNA gene RIKEN cDNA 4833413G10 gene
Gatad1 5 3639961 to 3647936 7975 - protein coding gene GATA zinc finger domain containing 1
Tssr49990 5 3640744 to 3640748 4 - TSS region transcription start site region 49990
Tssr49991 5 3641432 to 3641471 39 - TSS region transcription start site region 49991
Cpgi15511 5 3647155 to 3648107 952 CpG island CpG island 15511
Tssr49992 5 3647720 to 3647733 13 - TSS region transcription start site region 49992
Tssr49993 5 3647838 to 3648009 171 - TSS region transcription start site region 49993
Tssr49994 5 3648013 to 3648038 25 - TSS region transcription start site region 49994
Tssr49995 5 3648045 to 3648074 29 - TSS region transcription start site region 49995
Gm26238 5 3652544 to 3652660 116 + miRNA gene predicted gene, 26238
Tmbim7 5 3657004 to 3679865 22861 + protein coding gene transmembrane BAX inhibitor motif containing 7
Tssr49996 5 3657164 to 3657177 13 - TSS region transcription start site region 49996
Tssr45063 5 3657172 to 3657186 14 + TSS region transcription start site region 45063
Tssr45064 5 3657187 to 3657205 18 + TSS region transcription start site region 45064
Tssr45065 5 3657212 to 3657217 5 + TSS region transcription start site region 45065
Ankib1 5 3690000 to 3802925 112925 - protein coding gene ankyrin repeat and IBR domain containing 1
Gm22926 5 3695964 to 3696031 67 + miRNA gene predicted gene, 22926
Cpgi15512 5 3733057 to 3733266 209 CpG island CpG island 15512
D5Mit330 5 3744808 to 3744899 91 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 330