Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:3336485-3536008

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm36470 5 3270129 to 3343755 73626 - lncRNA gene predicted gene, 36470
Tssr1410 5 3340965 to 3340970 5 + TSS region transcription start site region 1410
Cpgi15508 5 3341079 to 3344635 3556 CpG island CpG island 15508
Tssr45034 5 3341196 to 3341211 15 + TSS region transcription start site region 45034
Tssr45035 5 3341437 to 3341466 29 + TSS region transcription start site region 45035
Tssr45036 5 3341477 to 3341485 8 + TSS region transcription start site region 45036
Tssr45037 5 3341522 to 3341547 25 + TSS region transcription start site region 45037
Tssr49983 5 3342403 to 3342410 7 - TSS region transcription start site region 49983
Cdk6 5 3343893 to 3531008 187115 + protein coding gene cyclin-dependent kinase 6
Tssr45038 5 3343907 to 3343945 38 + TSS region transcription start site region 45038
Tssr45039 5 3344194 to 3344241 47 + TSS region transcription start site region 45039
Gm29868 5 3393492 to 3435896 42404 - lncRNA gene predicted gene, 29868
Tssr49984 5 3461109 to 3461113 4 - TSS region transcription start site region 49984
Gm17590 5 3472861 to 3480873 8012 - antisense lncRNA gene predicted gene, 17590
Tssr45040 5 3474943 to 3474956 13 + TSS region transcription start site region 45040
Tssr45041 5 3479707 to 3479724 17 + TSS region transcription start site region 45041
Tssr49985 5 3480863 to 3480884 21 - TSS region transcription start site region 49985
Tssr45042 5 3494611 to 3494651 40 + TSS region transcription start site region 45042
Tssr1411 5 3494921 to 3494934 13 + TSS region transcription start site region 1411
Tssr45043 5 3497841 to 3497877 36 + TSS region transcription start site region 45043
Gm42435 5 3498625 to 3500072 1447 - antisense lncRNA gene predicted gene 42435
Tssr49986 5 3501654 to 3501664 10 - TSS region transcription start site region 49986
Tssr1412 5 3501699 to 3501710 11 - TSS region transcription start site region 1412
Tssr45044 5 3501997 to 3502008 11 + TSS region transcription start site region 45044
Tssr45045 5 3502045 to 3502053 8 + TSS region transcription start site region 45045
Tssr49987 5 3502574 to 3502588 14 - TSS region transcription start site region 49987
Tssr45046 5 3502804 to 3502835 31 + TSS region transcription start site region 45046
Tssr45047 5 3515189 to 3515238 49 + TSS region transcription start site region 45047
Tssr45048 5 3521581 to 3521601 20 + TSS region transcription start site region 45048
Tssr45049 5 3522260 to 3522265 5 + TSS region transcription start site region 45049
Tssr45050 5 3527058 to 3527093 35 + TSS region transcription start site region 45050
D5Mit69 5 3527185 to 3527321 136 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 69