Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:137318637-137537064

66 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Slc12a9	5	137314558 to 137333597	19039	-	protein coding gene	solute carrier family 12 (potassium/chloride transporters), member 9
Tssr53973	5	137331069 to 137331077	8	-	TSS region	transcription start site region 53973
Cpgi16824	5	137333402 to 137334147	745		CpG island	CpG island 16824
Tssr53974	5	137333471 to 137333482	11	-	TSS region	transcription start site region 53974
Tssr53975	5	137333516 to 137333557	41	-	TSS region	transcription start site region 53975
Tssr53976	5	137333561 to 137333575	14	-	TSS region	transcription start site region 53976
Tssr49329	5	137333640 to 137333659	19	+	TSS region	transcription start site region 49329
Gm43012	5	137337409 to 137338345	936	+	unclassified gene	predicted gene 43012
Cpgi16825	5	137338301 to 137338649	348		CpG island	CpG island 16825
Cpgi16826	5	137339756 to 137340029	273		CpG island	CpG island 16826
Cpgi16827	5	137348827 to 137349118	291		CpG island	CpG island 16827
Cpgi16828	5	137349772 to 137351092	1320		CpG island	CpG island 16828
Tssr49330	5	137350101 to 137350117	16	+	TSS region	transcription start site region 49330
Ephb4	5	137350109 to 137374522	24413	+	protein coding gene	Eph receptor B4
Tssr49331	5	137350130 to 137350146	16	+	TSS region	transcription start site region 49331
Tssr49332	5	137350162 to 137350177	15	+	TSS region	transcription start site region 49332
Tssr49333	5	137350196 to 137350205	9	+	TSS region	transcription start site region 49333
Tssr49334	5	137350371 to 137350479	108	+	TSS region	transcription start site region 49334
Cpgi16829	5	137357643 to 137358016	373		CpG island	CpG island 16829
Zan	5	137378637 to 137477064	98427	-	protein coding gene	zonadhesin
Tssr53977	5	137412623 to 137412627	4	-	TSS region	transcription start site region 53977
D5Mit326	5	137429891 to 137430014	123		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 326
Rpl36-ps9	5	137432987 to 137433263	276	+	pseudogene	ribosomal protein L36, pseudogene 9
D5Mit373	5	137433664 to 137433787	123		DNA segment	DNA Segment, Chr 5, Massachusetts Institute of Technology 373
Tssr53978	5	137472226 to 137472239	13	-	TSS region	transcription start site region 53978
Tssr53979	5	137477071 to 137477102	31	-	TSS region	transcription start site region 53979
Gm38725	5	137478036 to 137480148	2112	+	lncRNA gene	predicted gene, 38725
Gm36056	5	137482894 to 137485503	2609	+	lncRNA gene	predicted gene, 36056
Epo	5	137483020 to 137485816	2796	-	protein coding gene	erythropoietin
Cpgi16830	5	137485709 to 137486054	345		CpG island	CpG island 16830
D5Mit46	5	137489159 to 137489392	233		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 46
Pop7	5	137501439 to 137502429	990	-	protein coding gene	processing of precursor 7, ribonuclease P family, (S. cerevisiae)
Cpgi16831	5	137501734 to 137503164	1430		CpG island	CpG island 16831
Tssr53980	5	137502358 to 137502390	32	-	TSS region	transcription start site region 53980
Tssr53981	5	137502402 to 137502436	34	-	TSS region	transcription start site region 53981
9130604C24Rik	5	137502673 to 137503628	955	+	lincRNA gene	RIKEN cDNA 9130604C24 gene
Cpgi16832	5	137509772 to 137511430	1658		CpG island	CpG island 16832
Gm8066	5	137510253 to 137517501	7248	+	lincRNA gene	predicted gene 8066
Tssr49335	5	137510406 to 137510460	54	+	TSS region	transcription start site region 49335
Tssr1719	5	137517459 to 137517479	20	+	TSS region	transcription start site region 1719
Gigyf1	5	137518548 to 137527935	9387	+	protein coding gene	GRB10 interacting GYF protein 1
Tssr49336	5	137527282 to 137527285	3	+	TSS region	transcription start site region 49336
Gnb2	5	137528129 to 137533229	5100	-	protein coding gene	guanine nucleotide binding protein (G protein), beta 2
Tssr53982	5	137528496 to 137528512	16	-	TSS region	transcription start site region 53982
Tssr53983	5	137528888 to 137528914	26	-	TSS region	transcription start site region 53983
Tssr53984	5	137529107 to 137529115	8	-	TSS region	transcription start site region 53984
Tssr53985	5	137529135 to 137529173	38	-	TSS region	transcription start site region 53985
Mir6418	5	137529480 to 137529594	114	-	miRNA gene	microRNA 6418
Tssr53986	5	137529675 to 137529692	17	-	TSS region	transcription start site region 53986
Tssr53987	5	137529876 to 137529892	16	-	TSS region	transcription start site region 53987
Cpgi16833	5	137530689 to 137531236	547		CpG island	CpG island 16833
Tssr53988	5	137530741 to 137530794	53	-	TSS region	transcription start site region 53988
Tssr53989	5	137530990 to 137531049	59	-	TSS region	transcription start site region 53989
Tssr53990	5	137531064 to 137531078	14	-	TSS region	transcription start site region 53990
Tssr53991	5	137531140 to 137531157	17	-	TSS region	transcription start site region 53991
Tssr53992	5	137531204 to 137531236	32	-	TSS region	transcription start site region 53992
Tssr49337	5	137531284 to 137531291	7	+	TSS region	transcription start site region 49337
Cpgi16834	5	137531420 to 137532532	1112		CpG island	CpG island 16834
Tssr53993	5	137531961 to 137531984	23	-	TSS region	transcription start site region 53993
Gm17112	5	137532423 to 137540718	8295	+	antisense lncRNA gene	predicted gene 17112
Tssr53994	5	137532773 to 137532793	20	-	TSS region	transcription start site region 53994
Cpgi16835	5	137532896 to 137533491	595		CpG island	CpG island 16835
Tssr53995	5	137533170 to 137533198	28	-	TSS region	transcription start site region 53995
Tssr1720	5	137533201 to 137533206	5	-	TSS region	transcription start site region 1720
Tssr53996	5	137533212 to 137533290	78	-	TSS region	transcription start site region 53996
Tssr53997	5	137533297 to 137533311	14	-	TSS region	transcription start site region 53997