Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115669707-116020402

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bicdl1 5 115648175 to 115731621 83446 - protein coding gene BICD family like cargo adaptor 1
Cpgi16386 5 115730724 to 115733050 2326 CpG island CpG island 16386
Tssr52825 5 115732211 to 115732256 45 - TSS region transcription start site region 52825
Tssr52826 5 115732257 to 115732283 26 - TSS region transcription start site region 52826
Tssr52827 5 115732481 to 115732496 15 - TSS region transcription start site region 52827
Tssr52828 5 115754915 to 115754930 15 - TSS region transcription start site region 52828
Gm13841 5 115801677 to 115802159 482 - pseudogene predicted gene 13841
Cpgi16387 5 115844707 to 115845402 695 CpG island CpG island 16387
Cit 5 115845224 to 116008586 163362 + protein coding gene citron
Tssr48325 5 115845229 to 115845301 72 + TSS region transcription start site region 48325
Tssr48326 5 115859036 to 115859074 38 + TSS region transcription start site region 48326
Tssr48327 5 115859123 to 115859132 9 + TSS region transcription start site region 48327
D5Mit187 5 115863998 to 115864139 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 187
Tssr48328 5 115866483 to 115866488 5 + TSS region transcription start site region 48328
Gm42473 5 115870144 to 115872434 2290 + unclassified gene predicted gene 42473
Gm42008 5 115901533 to 115907321 5788 - lncRNA gene predicted gene, 42008
Gm42471 5 115902430 to 115904294 1864 + unclassified gene predicted gene 42471
Cpgi16388 5 115907101 to 115907765 664 CpG island CpG island 16388
Tssr48329 5 115907448 to 115907508 60 + TSS region transcription start site region 48329
Tssr48330 5 115907535 to 115907550 15 + TSS region transcription start site region 48330
Tssr48331 5 115908514 to 115908522 8 + TSS region transcription start site region 48331
Tssr48332 5 115908523 to 115908538 15 + TSS region transcription start site region 48332
Tssr48333 5 115908695 to 115908734 39 + TSS region transcription start site region 48333
Gm36185 5 115918631 to 115923636 5005 - lncRNA gene predicted gene, 36185
Tssr52829 5 115922156 to 115922181 25 - TSS region transcription start site region 52829
Tssr48334 5 115945308 to 115945341 33 + TSS region transcription start site region 48334
Tssr48335 5 115947926 to 115947947 21 + TSS region transcription start site region 48335
Tssr48336 5 115974854 to 115974856 2 + TSS region transcription start site region 48336
Tssr48337 5 115989815 to 115989820 5 + TSS region transcription start site region 48337
Cpgi16389 5 115994225 to 115994441 216 CpG island CpG island 16389
Tssr48338 5 116006777 to 116006781 4 + TSS region transcription start site region 48338
Tssr48339 5 116006831 to 116006835 4 + TSS region transcription start site region 48339
Gm14508 5 116009316 to 116016105 6789 + antisense lncRNA gene predicted gene 14508
Tssr48340 5 116009323 to 116009330 7 + TSS region transcription start site region 48340
Prkab1 5 116013586 to 116024503 10917 - protein coding gene protein kinase, AMP-activated, beta 1 non-catalytic subunit