Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113692444-113822400

31 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
1700069L16Rik	5	113692424 to 113724772	32348	-	protein coding gene	RIKEN cDNA 1700069L16 gene
Gm46919	5	113696020 to 113698711	2691	-	lncRNA gene	predicted gene, 46919
Tssr48030	5	113717377 to 113717414	37	+	TSS region	transcription start site region 48030
Cpgi16297	5	113724585 to 113724821	236		CpG island	CpG island 16297
Tssr52649	5	113724771 to 113724788	17	-	TSS region	transcription start site region 52649
Cpgi16298	5	113727348 to 113727514	166		CpG island	CpG island 16298
Cpgi16299	5	113735278 to 113736481	1203		CpG island	CpG island 16299
Ficd	5	113735803 to 113740600	4797	+	protein coding gene	FIC domain containing
Tssr48031	5	113736003 to 113736030	27	+	TSS region	transcription start site region 48031
Sart3	5	113742444 to 113772505	30061	-	protein coding gene	squamous cell carcinoma antigen recognized by T cells 3
Tssr52650	5	113745188 to 113745197	9	-	TSS region	transcription start site region 52650
Gm3511	5	113767123 to 113767326	203	+	pseudogene	predicted gene 3511
Cpgi16300	5	113770917 to 113773401	2484		CpG island	CpG island 16300
Tssr52651	5	113771643 to 113771659	16	-	TSS region	transcription start site region 52651
Tssr52652	5	113772635 to 113772706	71	-	TSS region	transcription start site region 52652
Tssr48032	5	113772786 to 113772827	41	+	TSS region	transcription start site region 48032
Iscu	5	113772812 to 113778282	5470	+	protein coding gene	iron-sulfur cluster assembly enzyme
Tmem119	5	113793729 to 113800358	6629	-	protein coding gene	transmembrane protein 119
Cpgi16301	5	113795379 to 113795929	550		CpG island	CpG island 16301
Tssr52653	5	113800356 to 113800412	56	-	TSS region	transcription start site region 52653
Gm42004	5	113800591 to 113814984	14393	+	lncRNA gene	predicted gene, 42004
Tssr52654	5	113805430 to 113805432	2	-	TSS region	transcription start site region 52654
Gm19931	5	113817225 to 113817592	367	+	pseudogene	predicted gene, 19931
Selplg	5	113818536 to 113832644	14108	-	protein coding gene	selectin, platelet (p-selectin) ligand
Cpgi16302	5	113819149 to 113819452	303		CpG island	CpG island 16302
Tssr52655	5	113819282 to 113819297	15	-	TSS region	transcription start site region 52655
Tssr52656	5	113819301 to 113819325	24	-	TSS region	transcription start site region 52656
Tssr48033	5	113819389 to 113819457	68	+	TSS region	transcription start site region 48033
Tssr48034	5	113819544 to 113819630	86	+	TSS region	transcription start site region 48034
Tssr52657	5	113820099 to 113820120	21	-	TSS region	transcription start site region 52657
Tssr52658	5	113820159 to 113820171	12	-	TSS region	transcription start site region 52658