Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:94179483-95049500

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Habiir3 4 83838893 to 94405503 10566610 QTL hyperoxic acute lung injury imprinted region 3
Gm12648 4 94089576 to 94425588 336012 - lincRNA gene predicted gene 12648
Tssr42435 4 94327852 to 94327857 5 - TSS region transcription start site region 42435
Tssr42436 4 94329428 to 94329432 4 - TSS region transcription start site region 42436
Tssr42437 4 94331592 to 94331602 10 - TSS region transcription start site region 42437
Tssr42438 4 94331613 to 94331626 13 - TSS region transcription start site region 42438
Tssr1231 4 94331654 to 94331655 1 - TSS region transcription start site region 1231
Gm12654 4 94395658 to 94396244 586 + pseudogene predicted gene 12654
D4Mit145 4 94405373 to 94405503 130 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 145
Cpgi14450 4 94428880 to 94429177 297 CpG island CpG island 14450
Gm26410 4 94434224 to 94434484 260 - unclassified non-coding RNA gene predicted gene, 26410
Gm12655 4 94460931 to 94477180 16249 - unclassified non-coding RNA gene predicted gene 12655
Tssr42439 4 94477167 to 94477207 40 - TSS region transcription start site region 42439
Gm22804 4 94487883 to 94487983 100 + snoRNA gene predicted gene, 22804
D4Mit350 4 94495101 to 94495222 121 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 350
Gm12656 4 94496989 to 94497556 567 + pseudogene predicted gene 12656
Caap1 4 94500081 to 94556796 56715 - protein coding gene caspase activity and apoptosis inhibitor 1
Tssr42440 4 94533305 to 94533310 5 - TSS region transcription start site region 42440
Tssr42441 4 94555080 to 94555086 6 - TSS region transcription start site region 42441
Cpgi14451 4 94556183 to 94556969 786 CpG island CpG island 14451
Gm10306 4 94556546 to 94557078 532 + protein coding gene predicted gene 10306
Tssr42442 4 94556737 to 94556802 65 - TSS region transcription start site region 42442
Plaa 4 94567514 to 94603244 35730 - protein coding gene phospholipase A2, activating protein
Tssr42443 4 94569285 to 94569304 19 - TSS region transcription start site region 42443
Tssr42444 4 94587345 to 94587361 16 - TSS region transcription start site region 42444
Gm12657 4 94599385 to 94599795 410 + pseudogene predicted gene 12657
Cpgi14452 4 94602590 to 94603612 1022 CpG island CpG island 14452
Tssr42445 4 94603095 to 94603193 98 - TSS region transcription start site region 42445
Tssr42446 4 94603203 to 94603228 25 - TSS region transcription start site region 42446
Tssr42447 4 94603239 to 94603253 14 - TSS region transcription start site region 42447
Tssr37794 4 94603261 to 94603281 20 + TSS region transcription start site region 37794
Tssr37795 4 94603521 to 94603538 17 + TSS region transcription start site region 37795
Cpgi14453 4 94614322 to 94614924 602 CpG island CpG island 14453
Tssr37796 4 94614483 to 94614500 17 + TSS region transcription start site region 37796
Ift74 4 94614491 to 94693229 78738 + protein coding gene intraflagellar transport 74
Tssr37797 4 94614514 to 94614570 56 + TSS region transcription start site region 37797
Tssr37798 4 94614589 to 94614598 9 + TSS region transcription start site region 37798
Tssr37799 4 94624726 to 94624744 18 + TSS region transcription start site region 37799
Tssr37800 4 94627250 to 94627260 10 + TSS region transcription start site region 37800
Lrrc19 4 94636653 to 94650144 13491 - protein coding gene leucine rich repeat containing 19
Tssr37801 4 94642417 to 94642421 4 + TSS region transcription start site region 37801
Tssr42448 4 94650092 to 94650127 35 - TSS region transcription start site region 42448
Tssr42449 4 94650134 to 94650149 15 - TSS region transcription start site region 42449
Mir872 4 94665157 to 94665237 80 + miRNA gene microRNA 872
Gm40205 4 94721603 to 94732564 10961 + lncRNA gene predicted gene, 40205
Tssr37802 4 94735211 to 94735224 13 + TSS region transcription start site region 37802
Tssr37803 4 94739276 to 94739298 22 + TSS region transcription start site region 37803
Tek 4 94739289 to 94874976 135687 + protein coding gene TEK receptor tyrosine kinase
Tssr37804 4 94739448 to 94739455 7 + TSS region transcription start site region 37804
Tssr37805 4 94739462 to 94739484 22 + TSS region transcription start site region 37805
Tssr37806 4 94739493 to 94739513 20 + TSS region transcription start site region 37806
Tssr37807 4 94739522 to 94739537 15 + TSS region transcription start site region 37807
Tssr37808 4 94739565 to 94739587 22 + TSS region transcription start site region 37808
Tssr1232 4 94740018 to 94740021 3 + TSS region transcription start site region 1232
Tssr37809 4 94751583 to 94751586 3 + TSS region transcription start site region 37809
Tssr37810 4 94820769 to 94820785 16 + TSS region transcription start site region 37810
Tssr37811 4 94845748 to 94845752 4 + TSS region transcription start site region 37811
Eqtn 4 94907267 to 94928843 21576 - protein coding gene equatorin, sperm acrosome associated
Tssr42450 4 94928789 to 94928815 26 - TSS region transcription start site region 42450
Tssr42451 4 94928820 to 94928848 28 - TSS region transcription start site region 42451
Gm12693 4 94935621 to 94936103 482 + pseudogene predicted gene 12693
Mysm1 4 94942040 to 94979100 37060 - protein coding gene myb-like, SWIRM and MPN domains 1
Tssr42452 4 94945964 to 94945972 8 - TSS region transcription start site region 42452
Cpgi14454 4 94978654 to 94979444 790 CpG island CpG island 14454
Tssr42453 4 94979063 to 94979106 43 - TSS region transcription start site region 42453
Gm12694 4 94979301 to 95018964 39663 + antisense lncRNA gene predicted gene 12694
Gm12703 4 95029963 to 95048370 18407 - unclassified non-coding RNA gene predicted gene 12703
Gm12704 4 95039162 to 95039625 463 - pseudogene predicted gene 12704
Jun 4 95049036 to 95052222 3186 - protein coding gene jun proto-oncogene