Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:48594256-49524330

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmeff1 4 48585174 to 48663131 77957 + protein coding gene transmembrane protein with EGF-like and two follistatin-like domains 1
Tssr37243 4 48610441 to 48610448 7 + TSS region transcription start site region 37243
Tssr37244 4 48610488 to 48610507 19 + TSS region transcription start site region 37244
Tssr37245 4 48615530 to 48615535 5 + TSS region transcription start site region 37245
Cpgi14287 4 48617186 to 48617452 266 CpG island CpG island 14287
Tssr37246 4 48618744 to 48618769 25 + TSS region transcription start site region 37246
Tssr37247 4 48618927 to 48618933 6 + TSS region transcription start site region 37247
Tssr37248 4 48636895 to 48636908 13 + TSS region transcription start site region 37248
Tssr37249 4 48662382 to 48662408 26 + TSS region transcription start site region 37249
Tssr37250 4 48663502 to 48663525 23 + TSS region transcription start site region 37250
Cavin4 4 48663514 to 48673492 9978 + protein coding gene caveolae associated 4
Tssr37251 4 48663546 to 48663563 17 + TSS region transcription start site region 37251
Gm12439 4 48675156 to 48675520 364 + pseudogene predicted gene 12439
Gm12438 4 48745515 to 48745850 335 - pseudogene predicted gene 12438
Gm24573 4 48762851 to 48762962 111 - rRNA gene predicted gene, 24573
D4Mit273 4 48782300 to 48782424 124 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 273
Gm23746 4 48896499 to 48896623 124 + snoRNA gene predicted gene, 23746
Tssr37252 4 48898558 to 48898565 7 + TSS region transcription start site region 37252
Gm12436 4 48898593 to 48963237 64644 + lincRNA gene predicted gene 12436
4933437F24Rik 4 48970694 to 48972164 1470 unclassified gene RIKEN cDNA 4933437F24 gene
Gm12442 4 48972978 to 48973315 337 + pseudogene predicted gene 12442
Cpgi14288 4 49058784 to 49060202 1418 CpG island CpG island 14288
Tssr37253 4 49059231 to 49059247 16 + TSS region transcription start site region 37253
Tssr37254 4 49059256 to 49059330 74 + TSS region transcription start site region 37254
Tssr37255 4 49059335 to 49059347 12 + TSS region transcription start site region 37255
Tssr37256 4 49059439 to 49059465 26 + TSS region transcription start site region 37256
Plppr1 4 49059462 to 49340261 280799 + protein coding gene phospholipid phosphatase related 1
Tssr37257 4 49059466 to 49059550 84 + TSS region transcription start site region 37257
Gm32657 4 49227442 to 49244719 17277 - lncRNA gene predicted gene, 32657
Gm22685 4 49289298 to 49289403 105 + snRNA gene predicted gene, 22685
D4Mit112 4 49304001 to 49304124 123 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 112
Gm12453 4 49342248 to 49342578 330 + pseudogene predicted gene 12453
Rbpj-ps1 4 49350522 to 49351527 1005 + pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 1
Acnat2 4 49379840 to 49408151 28311 - protein coding gene acyl-coenzyme A amino acid N-acyltransferase 2
Tssr41646 4 49383689 to 49383716 27 - TSS region transcription start site region 41646
Tssr41647 4 49383783 to 49383793 10 - TSS region transcription start site region 41647
Gm12451 4 49396112 to 49407732 11620 + pseudogene predicted gene 12451
Tssr41648 4 49408042 to 49408045 3 - TSS region transcription start site region 41648
Gm12452 4 49412307 to 49412637 330 + pseudogene predicted gene 12452
Rbpj-ps2 4 49430226 to 49444084 13858 + pseudogene recombination signal binding protein for immunoglobulin kappa J region, pseudogene 2
Tssr41649 4 49446293 to 49446312 19 - TSS region transcription start site region 41649
Acnat1 4 49447105 to 49473912 26807 - protein coding gene acyl-coenzyme A amino acid N-acyltransferase 1
Tssr41650 4 49447172 to 49447176 4 - TSS region transcription start site region 41650
Tssr41651 4 49451234 to 49451274 40 - TSS region transcription start site region 41651
Tssr41652 4 49473870 to 49473887 17 - TSS region transcription start site region 41652
Tssr41653 4 49473905 to 49473918 13 - TSS region transcription start site region 41653
Gm26424 4 49474307 to 49474410 103 + snRNA gene predicted gene, 26424
Gm33009 4 49474707 to 49487266 12559 + lncRNA gene predicted gene, 33009
9030417H13Rik 4 49478385 to 49481035 2650 unclassified gene RIKEN cDNA 9030417H13 gene
Tssr41654 4 49481034 to 49481044 10 - TSS region transcription start site region 41654
Tssr41655 4 49481098 to 49481108 10 - TSS region transcription start site region 41655
Tssr41656 4 49481117 to 49481128 11 - TSS region transcription start site region 41656
Tssr41657 4 49481168 to 49481182 14 - TSS region transcription start site region 41657
Tssr41658 4 49481197 to 49481208 11 - TSS region transcription start site region 41658
Tssr41659 4 49481273 to 49481309 36 - TSS region transcription start site region 41659
Gm32894 4 49488479 to 49504473 15994 + lncRNA gene predicted gene, 32894
Baat 4 49489422 to 49506557 17135 - protein coding gene bile acid-Coenzyme A: amino acid N-acyltransferase
Tssr41660 4 49506490 to 49506513 23 - TSS region transcription start site region 41660
Tssr41661 4 49506528 to 49506533 5 - TSS region transcription start site region 41661
Tssr41662 4 49506538 to 49506563 25 - TSS region transcription start site region 41662
Mrpl50 4 49512597 to 49521083 8486 - protein coding gene mitochondrial ribosomal protein L50
Cpgi14289 4 49520651 to 49521678 1027 CpG island CpG island 14289
Tssr41663 4 49521036 to 49521089 53 - TSS region transcription start site region 41663
Zfp189 4 49521176 to 49531517 10341 + protein coding gene zinc finger protein 189
Tssr37258 4 49521214 to 49521296 82 + TSS region transcription start site region 37258