Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:43387426-43517473

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rusc2 4 43381979 to 43427088 45109 + protein coding gene RUN and SH3 domain containing 2
Tssr36942 4 43392103 to 43392110 7 + TSS region transcription start site region 36942
Tssr36943 4 43394953 to 43394958 5 + TSS region transcription start site region 36943
Tssr41406 4 43399769 to 43399799 30 - TSS region transcription start site region 41406
Tssr36944 4 43401232 to 43401293 61 + TSS region transcription start site region 36944
Tssr41407 4 43406018 to 43406053 35 - TSS region transcription start site region 41407
Tssr36945 4 43406266 to 43406277 11 + TSS region transcription start site region 36945
Cpgi14185 4 43406421 to 43406708 287 CpG island CpG island 14185
Tssr36946 4 43406490 to 43406615 125 + TSS region transcription start site region 36946
Tssr36947 4 43414721 to 43414733 12 + TSS region transcription start site region 36947
Tssr36948 4 43416149 to 43416174 25 + TSS region transcription start site region 36948
Cpgi14186 4 43421514 to 43421779 265 CpG island CpG island 14186
Cpgi14187 4 43425745 to 43426002 257 CpG island CpG island 14187
Fam166b 4 43427019 to 43429134 2115 - protein coding gene family with sequence similarity 166, member B
Cpgi14188 4 43427465 to 43427746 281 CpG island CpG island 14188
Tssr41408 4 43429071 to 43429088 17 - TSS region transcription start site region 41408
Tssr41409 4 43429128 to 43429139 11 - TSS region transcription start site region 41409
Cpgi14189 4 43441851 to 43444145 2294 CpG island CpG island 14189
Tssr36949 4 43442236 to 43442315 79 + TSS region transcription start site region 36949
Tesk1 4 43442277 to 43448075 5798 + protein coding gene testis specific protein kinase 1
Tssr36950 4 43442320 to 43442339 19 + TSS region transcription start site region 36950
Tssr36951 4 43442360 to 43442369 9 + TSS region transcription start site region 36951
Tssr36952 4 43442402 to 43442411 9 + TSS region transcription start site region 36952
Tssr36953 4 43442468 to 43442483 15 + TSS region transcription start site region 36953
Tssr36954 4 43442484 to 43442501 17 + TSS region transcription start site region 36954
Tssr36955 4 43442514 to 43442527 13 + TSS region transcription start site region 36955
Tssr36956 4 43442560 to 43442567 7 + TSS region transcription start site region 36956
Tssr41410 4 43442958 to 43442973 15 - TSS region transcription start site region 41410
Tssr36957 4 43443079 to 43443090 11 + TSS region transcription start site region 36957
Tssr36958 4 43443102 to 43443130 28 + TSS region transcription start site region 36958
Tssr36959 4 43443135 to 43443156 21 + TSS region transcription start site region 36959
Tssr36960 4 43443157 to 43443169 12 + TSS region transcription start site region 36960
Tssr36961 4 43446005 to 43446028 23 + TSS region transcription start site region 36961
Cd72 4 43447724 to 43454741 7017 - protein coding gene CD72 antigen
Tssr36962 4 43452426 to 43452473 47 + TSS region transcription start site region 36962
Tssr41411 4 43452457 to 43452489 32 - TSS region transcription start site region 41411
Tssr41412 4 43452518 to 43452543 25 - TSS region transcription start site region 41412
Tssr41413 4 43452551 to 43452563 12 - TSS region transcription start site region 41413
Tssr41414 4 43452589 to 43452613 24 - TSS region transcription start site region 41414
Cpgi14190 4 43453367 to 43453898 531 CpG island CpG island 14190
Tssr36963 4 43453785 to 43453798 13 + TSS region transcription start site region 36963
Tssr36964 4 43453825 to 43453838 13 + TSS region transcription start site region 36964
Tssr36965 4 43454162 to 43454192 30 + TSS region transcription start site region 36965
Tssr41415 4 43454537 to 43454547 10 - TSS region transcription start site region 41415
Tssr41416 4 43454564 to 43454576 12 - TSS region transcription start site region 41416
Tssr41417 4 43454582 to 43454587 5 - TSS region transcription start site region 41417
Tssr41418 4 43454600 to 43454635 35 - TSS region transcription start site region 41418
Tssr41419 4 43454876 to 43454900 24 - TSS region transcription start site region 41419
Tssr41420 4 43454913 to 43454928 15 - TSS region transcription start site region 41420
Tssr36966 4 43466155 to 43466169 14 + TSS region transcription start site region 36966
Tssr36967 4 43473400 to 43473429 29 + TSS region transcription start site region 36967
Tssr41421 4 43478765 to 43478811 46 - TSS region transcription start site region 41421
Sit1 4 43482083 to 43483709 1626 - protein coding gene suppression inducing transmembrane adaptor 1
Tssr36968 4 43482271 to 43482288 17 + TSS region transcription start site region 36968
Tssr41422 4 43483588 to 43483598 10 - TSS region transcription start site region 41422
Tssr41423 4 43483696 to 43483730 34 - TSS region transcription start site region 41423
Cpgi14191 4 43492749 to 43493874 1125 CpG island CpG island 14191
Rmrp 4 43492785 to 43493059 274 - RNase MRP RNA gene RNA component of mitochondrial RNAase P
Tssr36969 4 43492823 to 43492841 18 + TSS region transcription start site region 36969
Tssr41424 4 43493051 to 43493065 14 - TSS region transcription start site region 41424
Ccdc107 4 43493340 to 43495921 2581 + protein coding gene coiled-coil domain containing 107
Tssr36970 4 43493345 to 43493430 85 + TSS region transcription start site region 36970
Arhgef39 4 43496142 to 43499695 3553 - protein coding gene Rho guanine nucleotide exchange factor (GEF) 39
Cpgi14192 4 43499232 to 43499929 697 CpG island CpG island 14192
Tssr41425 4 43499617 to 43499677 60 - TSS region transcription start site region 41425
Gm12454 4 43504428 to 43508747 4319 - antisense lncRNA gene predicted gene 12454
Tssr36971 4 43506338 to 43506360 22 + TSS region transcription start site region 36971
Tssr36972 4 43507018 to 43507034 16 + TSS region transcription start site region 36972
Car9 4 43507026 to 43513729 6703 + protein coding gene carbonic anhydrase 9
Tssr36973 4 43507040 to 43507051 11 + TSS region transcription start site region 36973
Tssr36974 4 43507085 to 43507096 11 + TSS region transcription start site region 36974
Cpgi14193 4 43508568 to 43508874 306 CpG island CpG island 14193
Tssr41426 4 43508714 to 43508734 20 - TSS region transcription start site region 41426
Tssr41427 4 43508740 to 43508753 13 - TSS region transcription start site region 41427
Tssr36975 4 43508850 to 43508899 49 + TSS region transcription start site region 36975
Tpm2 4 43514711 to 43523765 9054 - protein coding gene tropomyosin 2, beta
Tssr41428 4 43515168 to 43515190 22 - TSS region transcription start site region 41428
Tssr41429 4 43515302 to 43515321 19 - TSS region transcription start site region 41429
Tssr41430 4 43515701 to 43515765 64 - TSS region transcription start site region 41430
Tssr41431 4 43515787 to 43515801 14 - TSS region transcription start site region 41431