Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:42658457-42980364

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Il11ra2 4 42656355 to 42661893 5538 - protein coding gene interleukin 11 receptor, alpha chain 2
Gm42276 4 42665778 to 42668802 3024 - lncRNA gene predicted gene, 42276
Tssr1150 4 42705970 to 42705975 5 + TSS region transcription start site region 1150
Gm21158 4 42708688 to 42717688 9000 - pseudogene predicted gene, 21158
Gm21955 4 42714926 to 42719893 4967 + protein coding gene predicted gene, 21955
Gm12395 4 42736593 to 42738094 1501 + antisense lncRNA gene predicted gene 12395
Ccl19 4 42754525 to 42756518 1993 - protein coding gene chemokine (C-C motif) ligand 19
Ccl21a 4 42772860 to 42773991 1131 - protein coding gene chemokine (C-C motif) ligand 21A (serine)
Tssr1151 4 42773987 to 42773995 8 - TSS region transcription start site region 1151
Gm12394 4 42790214 to 42796764 6550 - protein coding gene predicted gene 12394
4930578G10Rik 4 42808457 to 42830364 21907 + protein coding gene RIKEN cDNA 4930578G10 gene
B230220N19Rik 4 42826531 to 42832365 5834 unclassified non-coding RNA gene RIKEN cDNA B230220N19 gene
Fam205a1 4 42848071 to 42853888 5817 - protein coding gene family with sequence similarity 205, member A1
Fam205c 4 42868004 to 42874234 6230 - protein coding gene family with sequence similarity 205, member C
Tssr41380 4 42874180 to 42874187 7 - TSS region transcription start site region 41380
Tssr41381 4 42874197 to 42874223 26 - TSS region transcription start site region 41381
Tssr41382 4 42874227 to 42874239 12 - TSS region transcription start site region 41382
Tssr1152 4 42875000 to 42875002 2 - TSS region transcription start site region 1152
Tssr1153 4 42880376 to 42880405 29 + TSS region transcription start site region 1153
Tssr36899 4 42880726 to 42880743 17 + TSS region transcription start site region 36899
Cpgi14172 4 42916594 to 42917880 1286 CpG island CpG island 14172
Tssr36900 4 42916647 to 42916712 65 + TSS region transcription start site region 36900
Phf24 4 42916660 to 42944752 28092 + protein coding gene PHD finger protein 24
Tssr36901 4 42917110 to 42917136 26 + TSS region transcription start site region 36901
Tssr36902 4 42917234 to 42917333 99 + TSS region transcription start site region 36902
Tssr36903 4 42921799 to 42921803 4 + TSS region transcription start site region 36903
Tssr36904 4 42921863 to 42921872 9 + TSS region transcription start site region 36904
Tssr36905 4 42921910 to 42921919 9 + TSS region transcription start site region 36905
Tssr36906 4 42922253 to 42922260 7 + TSS region transcription start site region 36906
Tssr36907 4 42926380 to 42926389 9 + TSS region transcription start site region 36907
Cpgi14173 4 42933624 to 42934037 413 CpG island CpG island 14173
Tssr41383 4 42949516 to 42949527 11 - TSS region transcription start site region 41383
Cpgi14174 4 42949593 to 42950668 1075 CpG island CpG island 14174
Dnajb5 4 42949827 to 42959417 9590 + protein coding gene DnaJ heat shock protein family (Hsp40) member B5
Tssr36908 4 42949861 to 42949923 62 + TSS region transcription start site region 36908
Tssr36909 4 42950369 to 42950445 76 + TSS region transcription start site region 36909
Tssr36910 4 42950451 to 42950475 24 + TSS region transcription start site region 36910
Tssr36911 4 42950481 to 42950492 11 + TSS region transcription start site region 36911
Tssr36912 4 42952772 to 42952780 8 + TSS region transcription start site region 36912
Tssr36913 4 42952794 to 42952805 11 + TSS region transcription start site region 36913
Tssr36914 4 42952808 to 42952822 14 + TSS region transcription start site region 36914
Tssr1154 4 42952825 to 42952828 3 + TSS region transcription start site region 1154
Tssr36915 4 42957422 to 42957432 10 + TSS region transcription start site region 36915
Tssr36916 4 42957458 to 42957466 8 + TSS region transcription start site region 36916
Tssr36917 4 42969945 to 42969951 6 + TSS region transcription start site region 36917
1700022I11Rik 4 42969946 to 42974325 4379 + protein coding gene RIKEN cDNA 1700022I11 gene
Tssr36918 4 42969953 to 42969965 12 + TSS region transcription start site region 36918
Vcp 4 42979964 to 43000507 20543 - protein coding gene valosin containing protein