Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:28683647-31704181

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi14096 4 28812670 to 28815812 3142 CpG island CpG island 14096
Tssr36648 4 28812812 to 28812821 9 + TSS region transcription start site region 36648
Tssr1129 4 28813076 to 28813079 3 + TSS region transcription start site region 1129
Tssr36649 4 28813125 to 28813136 11 + TSS region transcription start site region 36649
Epha7 4 28813131 to 28967499 154368 + protein coding gene Eph receptor A7
Tssr36650 4 28813153 to 28813173 20 + TSS region transcription start site region 36650
Gm11915 4 28814297 to 28815076 779 - antisense lncRNA gene predicted gene 11915
Tssr1130 4 28815583 to 28815612 29 + TSS region transcription start site region 1130
D930030K17Rik 4 28836885 to 28839677 2792 unclassified gene RIKEN cDNA D930030K17 gene
Tssr36651 4 28847309 to 28847313 4 + TSS region transcription start site region 36651
Tssr36652 4 28914142 to 28914145 3 + TSS region transcription start site region 36652
2300010F08Rik 4 28926098 to 28929037 2939 unclassified gene RIKEN cDNA 2300010F08 gene
Tssr36653 4 28965101 to 28965143 42 + TSS region transcription start site region 36653
Gm11917 4 29068079 to 29088811 20732 + lincRNA gene predicted gene 11917
Gm11916 4 29090605 to 29091662 1057 + lincRNA gene predicted gene 11916
Gm11918 4 29125946 to 29126124 178 + pseudogene predicted gene 11918
D4Mit210 4 29154113 to 29154294 181 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 210
Gm11919 4 29195520 to 29196240 720 + pseudogene predicted gene 11919
D4Mit106 4 29310417 to 29310546 129 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 106
Gm11923 4 29490156 to 29490663 507 + pseudogene predicted gene 11923
Pgia35 4 29562377 to 29562509 132 QTL proteoglycan induced arthritis 35
Jcdq1 4 29562377 to 29562509 132 QTL joint cartilage degeneration QTL 1
D4Mit97 4 29562377 to 29562509 132 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 97
Gm11925 4 30193647 to 30194181 534 + pseudogene predicted gene 11925
Opfaq2 4 30343419 to 33824057 3480638 QTL open field activity QTL 2
Gm11924 4 30432112 to 30523783 91671 + lincRNA gene predicted gene 11924
Tssr36654 4 30664587 to 30664599 12 + TSS region transcription start site region 36654
4930556G01Rik 4 30664596 to 30796663 132067 + lincRNA gene RIKEN cDNA 4930556G01 gene
Tssr36655 4 30664604 to 30664614 10 + TSS region transcription start site region 36655
Gm22831 4 30701949 to 30702057 108 - miRNA gene predicted gene, 22831
Gm11920 4 30701973 to 30702535 562 - pseudogene predicted gene 11920
Tssr41128 4 30702742 to 30702747 5 - TSS region transcription start site region 41128
Tssr36656 4 30794947 to 30794949 2 + TSS region transcription start site region 36656
Gm42314 4 30992680 to 30996096 3416 + pseudogene predicted gene, 42314
Gm46849 4 31050066 to 31418507 368441 - lncRNA gene predicted gene, 46849
D4Mit192 4 31137059 to 31137166 107 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 192
Gm25705 4 31174909 to 31175012 103 - snRNA gene predicted gene, 25705
D4Ertd510e 4 31266047 to 31266250 203 DNA segment DNA segment, Chr 4, ERATO Doi 510, expressed
Gm32173 4 31324093 to 31332994 8901 + lncRNA gene predicted gene, 32173
Gm11922 4 31380472 to 31380946 474 + pseudogene predicted gene 11922
D4Mit292 4 31419024 to 31419124 100 DNA segment DNA Segment, Chr 4, Massachusetts Institute of Technology 292
Gm42315 4 31503062 to 31512101 9039 - lncRNA gene predicted gene, 42315
Tssr36657 4 31616576 to 31616578 2 + TSS region transcription start site region 36657
Gm42265 4 31628477 to 31628992 515 - lncRNA gene predicted gene, 42265