Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:133579008-133853977

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gpatch3 4 133574745 to 133584242 9497 + protein coding gene G patch domain containing 3
Cpgi15009 4 133584018 to 133584953 935 CpG island CpG island 15009
Tssr39491 4 133584337 to 133584348 11 + TSS region transcription start site region 39491
Tssr39492 4 133584355 to 133584415 60 + TSS region transcription start site region 39492
Gpn2 4 133584373 to 133591735 7362 + protein coding gene GPN-loop GTPase 2
Tssr39493 4 133584419 to 133584426 7 + TSS region transcription start site region 39493
Gm42324 4 133594939 to 133596007 1068 - lncRNA gene predicted gene, 42324
Tssr43769 4 133598765 to 133598788 23 - TSS region transcription start site region 43769
Tssr43770 4 133598797 to 133598830 33 - TSS region transcription start site region 43770
Cpgi15010 4 133599286 to 133600394 1108 CpG island CpG island 15010
Sfn 4 133600556 to 133602168 1612 - protein coding gene stratifin
Cpgi15011 4 133601454 to 133601924 470 CpG island CpG island 15011
Tssr43771 4 133601477 to 133601515 38 - TSS region transcription start site region 43771
Tssr43772 4 133601822 to 133601838 16 - TSS region transcription start site region 43772
Tssr43773 4 133601839 to 133601868 29 - TSS region transcription start site region 43773
Tssr43774 4 133601871 to 133601889 18 - TSS region transcription start site region 43774
Tssr43775 4 133601892 to 133601904 12 - TSS region transcription start site region 43775
Zdhhc18 4 133604656 to 133633480 28824 - protein coding gene zinc finger, DHHC domain containing 18
Tssr43776 4 133620688 to 133620710 22 - TSS region transcription start site region 43776
Tssr43777 4 133620735 to 133620762 27 - TSS region transcription start site region 43777
Tssr43778 4 133622522 to 133622533 11 - TSS region transcription start site region 43778
Tssr43779 4 133622558 to 133622577 19 - TSS region transcription start site region 43779
Tssr39494 4 133622709 to 133622746 37 + TSS region transcription start site region 39494
Tssr43780 4 133623069 to 133623076 7 - TSS region transcription start site region 43780
Tssr43781 4 133625600 to 133625629 29 - TSS region transcription start site region 43781
Tssr39495 4 133625987 to 133626009 22 + TSS region transcription start site region 39495
Tssr39496 4 133629540 to 133629549 9 + TSS region transcription start site region 39496
Tssr43782 4 133631130 to 133631158 28 - TSS region transcription start site region 43782
Tssr43783 4 133632120 to 133632137 17 - TSS region transcription start site region 43783
Tssr43784 4 133632235 to 133632268 33 - TSS region transcription start site region 43784
Tssr39497 4 133632238 to 133632264 26 + TSS region transcription start site region 39497
Tssr39498 4 133632339 to 133632363 24 + TSS region transcription start site region 39498
Cpgi15012 4 133632624 to 133633999 1375 CpG island CpG island 15012
Tssr39499 4 133633085 to 133633106 21 + TSS region transcription start site region 39499
Tssr43785 4 133633419 to 133633525 106 - TSS region transcription start site region 43785
Tssr43786 4 133633618 to 133633631 13 - TSS region transcription start site region 43786
Gm13213 4 133638210 to 133638683 473 - pseudogene predicted gene 13213
Cpgi15013 4 133645632 to 133645962 330 CpG island CpG island 15013
Gm22662 4 133654002 to 133654257 255 + unclassified non-coding RNA gene predicted gene, 22662
Tssr43787 4 133658838 to 133658844 6 - TSS region transcription start site region 43787
Tssr39500 4 133658956 to 133658978 22 + TSS region transcription start site region 39500
Pigv 4 133660387 to 133672647 12260 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class V
Tssr43788 4 133660745 to 133660783 38 - TSS region transcription start site region 43788
Tssr43789 4 133660864 to 133660910 46 - TSS region transcription start site region 43789
Tssr43790 4 133666671 to 133666678 7 - TSS region transcription start site region 43790
Cpgi15014 4 133672185 to 133673137 952 CpG island CpG island 15014
Tssr43791 4 133672601 to 133672652 51 - TSS region transcription start site region 43791
Tssr39501 4 133672673 to 133672733 60 + TSS region transcription start site region 39501
1700041L08Rik 4 133672718 to 133673236 518 unclassified gene RIKEN cDNA 1700041L08 gene
Tssr43792 4 133672982 to 133673002 20 - TSS region transcription start site region 43792
Tssr43793 4 133673137 to 133673160 23 - TSS region transcription start site region 43793
Tssr43794 4 133673216 to 133673242 26 - TSS region transcription start site region 43794
Tssr43795 4 133674067 to 133674115 48 - TSS region transcription start site region 43795
Arid1a 4 133679008 to 133753977 74969 - protein coding gene AT rich interactive domain 1A (SWI-like)
Tssr1328 4 133686302 to 133686307 5 + TSS region transcription start site region 1328
Tssr43796 4 133686673 to 133686694 21 - TSS region transcription start site region 43796
Mir7227 4 133717050 to 133717108 58 - miRNA gene microRNA 7227
Tssr43797 4 133720783 to 133720828 45 - TSS region transcription start site region 43797
Tssr43798 4 133720864 to 133720881 17 - TSS region transcription start site region 43798
Tssr43799 4 133720886 to 133720976 90 - TSS region transcription start site region 43799
Tssr43800 4 133722896 to 133722909 13 - TSS region transcription start site region 43800
Tssr43801 4 133722990 to 133723030 40 - TSS region transcription start site region 43801
Tssr43802 4 133723159 to 133723163 4 - TSS region transcription start site region 43802
Tssr43803 4 133751618 to 133751629 11 - TSS region transcription start site region 43803
Tssr39502 4 133751837 to 133751848 11 + TSS region transcription start site region 39502
Cpgi15015 4 133752049 to 133755024 2975 CpG island CpG island 15015
Tssr43804 4 133752704 to 133752756 52 - TSS region transcription start site region 43804
Tssr43805 4 133753030 to 133753044 14 - TSS region transcription start site region 43805
Tssr43806 4 133753616 to 133753666 50 - TSS region transcription start site region 43806
Tssr43807 4 133753860 to 133753869 9 - TSS region transcription start site region 43807
Tssr43808 4 133753915 to 133753926 11 - TSS region transcription start site region 43808
Tssr43809 4 133753961 to 133754019 58 - TSS region transcription start site region 43809
Tssr43810 4 133754222 to 133754237 15 - TSS region transcription start site region 43810
Tssr43811 4 133754260 to 133754297 37 - TSS region transcription start site region 43811
Tssr43812 4 133754299 to 133754316 17 - TSS region transcription start site region 43812
Tssr43813 4 133754322 to 133754378 56 - TSS region transcription start site region 43813
Tssr43814 4 133754397 to 133754408 11 - TSS region transcription start site region 43814
Cpgi15016 4 133756499 to 133757883 1384 CpG island CpG island 15016
Tssr43815 4 133756520 to 133756539 19 - TSS region transcription start site region 43815
Tssr43816 4 133756780 to 133756794 14 - TSS region transcription start site region 43816
Tssr43817 4 133757400 to 133757435 35 - TSS region transcription start site region 43817
Gm30019 4 133768128 to 133775447 7319 - lncRNA gene predicted gene, 30019
Gm29942 4 133774969 to 133781279 6310 + lncRNA gene predicted gene, 29942
D4Mit71 4 133785915 to 133786031 116 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 71
D4Dcr28 4 133785938 to 133786036 98 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 28
Gm34296 4 133792037 to 133821546 29509 - lncRNA gene predicted gene, 34296
Gm25270 4 133797582 to 133797719 137 - snRNA gene predicted gene, 25270
Cpgi15017 4 133813135 to 133814792 1657 CpG island CpG island 15017
Tssr43818 4 133813294 to 133813305 11 - TSS region transcription start site region 43818
Tssr39503 4 133813402 to 133813405 3 + TSS region transcription start site region 39503
Tssr39504 4 133813534 to 133813561 27 + TSS region transcription start site region 39504
Tssr43819 4 133814106 to 133814134 28 - TSS region transcription start site region 43819
Tssr43820 4 133815805 to 133815816 11 - TSS region transcription start site region 43820
Tssr39505 4 133816248 to 133816254 6 + TSS region transcription start site region 39505
Tssr39506 4 133816281 to 133816293 12 + TSS region transcription start site region 39506
Gm12974 4 133816420 to 133817614 1194 + lincRNA gene predicted gene 12974
Tssr39507 4 133816474 to 133816490 16 + TSS region transcription start site region 39507
Rps6ka1 4 133847290 to 133887797 40507 - protein coding gene ribosomal protein S6 kinase polypeptide 1