Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:116163678-116733685

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tspan1 4 116161869 to 116167601 5732 - protein coding gene tetraspanin 1
Tssr42867 4 116163701 to 116163722 21 - TSS region transcription start site region 42867
Tssr42868 4 116163755 to 116163771 16 - TSS region transcription start site region 42868
Tssr42869 4 116164407 to 116164415 8 - TSS region transcription start site region 42869
Tssr42870 4 116167563 to 116167579 16 - TSS region transcription start site region 42870
Tssr42871 4 116167591 to 116167607 16 - TSS region transcription start site region 42871
Tssr38507 4 116173364 to 116173380 16 + TSS region transcription start site region 38507
1700042G07Rik 4 116173372 to 116174290 918 + protein coding gene RIKEN cDNA 1700042G07 gene
Gm49337 4 116173384 to 116299841 126457 + protein coding gene predicted gene, 49337
Tssr38508 4 116173389 to 116173400 11 + TSS region transcription start site region 38508
Tssr38509 4 116173411 to 116173422 11 + TSS region transcription start site region 38509
Gm12951 4 116176246 to 116177732 1486 + lincRNA gene predicted gene 12951
D4Dcr16 4 116177874 to 116177969 95 DNA segment DNA Segment, Chr 4, Derry C. Roopenian 16
Llph-ps1 4 116200563 to 116200952 389 - pseudogene LLP homolog, pseudogene 1
Cpgi14631 4 116220697 to 116221895 1198 CpG island CpG island 14631
Tssr38510 4 116221590 to 116221615 25 + TSS region transcription start site region 38510
Pik3r3 4 116221618 to 116303056 81438 + protein coding gene phosphoinositide-3-kinase regulatory subunit 3
Tssr38511 4 116221621 to 116221632 11 + TSS region transcription start site region 38511
Tssr38512 4 116221633 to 116221650 17 + TSS region transcription start site region 38512
Tssr38513 4 116221677 to 116221688 11 + TSS region transcription start site region 38513
Tssr38514 4 116221689 to 116221698 9 + TSS region transcription start site region 38514
Gm18535 4 116250023 to 116251106 1083 - pseudogene predicted gene, 18535
D4Mit333 4 116289409 to 116289524 115 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 333
Tssr38515 4 116303851 to 116303854 3 + TSS region transcription start site region 38515
Mast2 4 116306762 to 116464183 157421 - protein coding gene microtubule associated serine/threonine kinase 2
Tssr42872 4 116329865 to 116329869 4 - TSS region transcription start site region 42872
Tssr42873 4 116371659 to 116371663 4 - TSS region transcription start site region 42873
Tssr42874 4 116371724 to 116371743 19 - TSS region transcription start site region 42874
Tssr42875 4 116371748 to 116371759 11 - TSS region transcription start site region 42875
Tssr42876 4 116371769 to 116371783 14 - TSS region transcription start site region 42876
Tssr42877 4 116371801 to 116371818 17 - TSS region transcription start site region 42877
A630078A22Rik 4 116382321 to 116385745 3424 unclassified gene RIKEN cDNA A630078A22 gene
Tssr42878 4 116404519 to 116404524 5 - TSS region transcription start site region 42878
Tssr42879 4 116406108 to 116406120 12 - TSS region transcription start site region 42879
Tssr42880 4 116406134 to 116406238 104 - TSS region transcription start site region 42880
Tssr42881 4 116406845 to 116406861 16 - TSS region transcription start site region 42881
D4Mit200 4 116413782 to 116413923 141 DNA segment DNA segment, Chr 4, Massachusetts Institute of Technology 200
Mmtg2 4 116413782 to 124161387 7747605 QTL modifier of mammary tumor growth 2
Abd1 4 116413923 to 89063832 -27350091 QTL autoimmune biliary disease 1
Tssr38516 4 116448678 to 116448685 7 + TSS region transcription start site region 38516
Gm12950 4 116448788 to 116449204 416 + pseudogene predicted gene 12950
Cpgi14632 4 116463358 to 116464871 1513 CpG island CpG island 14632
Tssr42882 4 116464151 to 116464274 123 - TSS region transcription start site region 42882
Cpgi14633 4 116507285 to 116507993 708 CpG island CpG island 14633
Tssr42883 4 116507466 to 116507492 26 - TSS region transcription start site region 42883
Ipp 4 116507549 to 116538243 30694 + protein coding gene IAP promoted placental gene
Tssr38517 4 116507584 to 116507623 39 + TSS region transcription start site region 38517
Tmem69 4 116551633 to 116555936 4303 - protein coding gene transmembrane protein 69
Gm12953 4 116551740 to 116552627 887 + antisense lncRNA gene predicted gene 12953
Tssr42884 4 116555896 to 116555957 61 - TSS region transcription start site region 42884
Cpgi14634 4 116556927 to 116558179 1252 CpG island CpG island 14634
Tssr42885 4 116557047 to 116557057 10 - TSS region transcription start site region 42885
Tssr38518 4 116557121 to 116557141 20 + TSS region transcription start site region 38518
Tssr38519 4 116557151 to 116557164 13 + TSS region transcription start site region 38519
Tssr42886 4 116557446 to 116557464 18 - TSS region transcription start site region 42886
Tssr38520 4 116557578 to 116557587 9 + TSS region transcription start site region 38520
Tssr38521 4 116557591 to 116557617 26 + TSS region transcription start site region 38521
Gpbp1l1 4 116557658 to 116593882 36224 + protein coding gene GC-rich promoter binding protein 1-like 1
Tssr38522 4 116557668 to 116557724 56 + TSS region transcription start site region 38522
Tssr38523 4 116557740 to 116557751 11 + TSS region transcription start site region 38523
Tssr38524 4 116557780 to 116557799 19 + TSS region transcription start site region 38524
Tssr38525 4 116558056 to 116558090 34 + TSS region transcription start site region 38525
Tssr38526 4 116560147 to 116560152 5 + TSS region transcription start site region 38526
C530005A16Rik 4 116589733 to 116597630 7897 - lncRNA gene RIKEN cDNA C530005A16 gene
Tssr38527 4 116593442 to 116593490 48 + TSS region transcription start site region 38527
Tssr38528 4 116596637 to 116596665 28 + TSS region transcription start site region 38528
Tssr38529 4 116596672 to 116596703 31 + TSS region transcription start site region 38529
Ccdc17 4 116596730 to 116600266 3536 + protein coding gene coiled-coil domain containing 17
Tssr38530 4 116596731 to 116596746 15 + TSS region transcription start site region 38530
Tssr38531 4 116596778 to 116596782 4 + TSS region transcription start site region 38531
Cpgi14635 4 116597210 to 116597990 780 CpG island CpG island 14635
Tssr42887 4 116597604 to 116597644 40 - TSS region transcription start site region 42887
Nasp 4 116601052 to 116627941 26889 - protein coding gene nuclear autoantigenic sperm protein (histone-binding)
Tssr42888 4 116610736 to 116610751 15 - TSS region transcription start site region 42888
Tssr38532 4 116610978 to 116611016 38 + TSS region transcription start site region 38532
Tssr42889 4 116611296 to 116611310 14 - TSS region transcription start site region 42889
Tssr38533 4 116611326 to 116611348 22 + TSS region transcription start site region 38533
Tssr42890 4 116611342 to 116611371 29 - TSS region transcription start site region 42890
Tssr38534 4 116612018 to 116612037 19 + TSS region transcription start site region 38534
Tssr42891 4 116612057 to 116612070 13 - TSS region transcription start site region 42891
Tssr42892 4 116615277 to 116615301 24 - TSS region transcription start site region 42892
Tssr42893 4 116618914 to 116618945 31 - TSS region transcription start site region 42893
Cpgi14636 4 116626712 to 116627514 802 CpG island CpG island 14636
A430091L06Rik 4 116626842 to 116628686 1844 unclassified gene RIKEN cDNA A430091L06 gene
Tssr42894 4 116627367 to 116627397 30 - TSS region transcription start site region 42894
Tssr42895 4 116627486 to 116627503 17 - TSS region transcription start site region 42895
Tssr42896 4 116627896 to 116627908 12 - TSS region transcription start site region 42896
Tssr42897 4 116627921 to 116627956 35 - TSS region transcription start site region 42897
Tssr42898 4 116627972 to 116627988 16 - TSS region transcription start site region 42898
Tssr38535 4 116636508 to 116636517 9 + TSS region transcription start site region 38535
Akr1a1 4 116636510 to 116651674 15164 - protein coding gene aldo-keto reductase family 1, member A1 (aldehyde reductase)
Tssr42899 4 116637517 to 116637521 4 - TSS region transcription start site region 42899
Tssr38536 4 116637746 to 116637757 11 + TSS region transcription start site region 38536
Tssr38537 4 116637800 to 116637822 22 + TSS region transcription start site region 38537
Tssr42900 4 116638463 to 116638477 14 - TSS region transcription start site region 42900
Tssr42901 4 116639071 to 116639107 36 - TSS region transcription start site region 42901
Tssr42902 4 116639150 to 116639163 13 - TSS region transcription start site region 42902
Tssr42903 4 116639958 to 116640005 47 - TSS region transcription start site region 42903
Tssr42904 4 116641040 to 116641053 13 - TSS region transcription start site region 42904
Tssr42905 4 116641068 to 116641084 16 - TSS region transcription start site region 42905
Tssr42906 4 116641111 to 116641128 17 - TSS region transcription start site region 42906
Tssr42907 4 116641135 to 116641153 18 - TSS region transcription start site region 42907
Tssr38538 4 116649807 to 116649849 42 + TSS region transcription start site region 38538
Tssr42908 4 116650467 to 116650487 20 - TSS region transcription start site region 42908
Cpgi14637 4 116651087 to 116651707 620 CpG island CpG island 14637
Tssr42909 4 116651389 to 116651409 20 - TSS region transcription start site region 42909
Tssr42910 4 116651419 to 116651426 7 - TSS region transcription start site region 42910
Tssr42911 4 116651435 to 116651446 11 - TSS region transcription start site region 42911
Tssr38539 4 116651508 to 116651535 27 + TSS region transcription start site region 38539
Tssr42912 4 116651541 to 116651549 8 - TSS region transcription start site region 42912
Tssr42913 4 116651566 to 116651571 5 - TSS region transcription start site region 42913
Tssr42914 4 116651596 to 116651636 40 - TSS region transcription start site region 42914
Tssr42915 4 116651644 to 116651665 21 - TSS region transcription start site region 42915
Tssr42916 4 116651677 to 116651682 5 - TSS region transcription start site region 42916
Tssr42917 4 116659552 to 116659560 8 - TSS region transcription start site region 42917
Tssr42918 4 116666769 to 116666784 15 - TSS region transcription start site region 42918
Tssr38540 4 116668486 to 116668505 19 + TSS region transcription start site region 38540
Gm25137 4 116674153 to 116674262 109 + snRNA gene predicted gene, 25137
Tssr38541 4 116674986 to 116675035 49 + TSS region transcription start site region 38541
Tssr38542 4 116678776 to 116678800 24 + TSS region transcription start site region 38542
Tssr42919 4 116679325 to 116679333 8 - TSS region transcription start site region 42919
Tssr42920 4 116682981 to 116683009 28 - TSS region transcription start site region 42920
Tssr42921 4 116684335 to 116684358 23 - TSS region transcription start site region 42921
AV051173 4 116684962 to 116686022 1060 - DNA segment expressed sequence AV051173
Cpgi14638 4 116685399 to 116686188 789 CpG island CpG island 14638
Tssr42922 4 116685401 to 116685418 17 - TSS region transcription start site region 42922
Tssr38543 4 116685590 to 116685608 18 + TSS region transcription start site region 38543
Prdx1 4 116685599 to 116700000 14401 + protein coding gene peroxiredoxin 1
Tssr1272 4 116685656 to 116685674 18 + TSS region transcription start site region 1272
Tssr38544 4 116685859 to 116685872 13 + TSS region transcription start site region 38544
Tssr42923 4 116685973 to 116686011 38 - TSS region transcription start site region 42923
Tssr1273 4 116686165 to 116686189 24 + TSS region transcription start site region 1273
Tssr38545 4 116686382 to 116686424 42 + TSS region transcription start site region 38545
Tssr38546 4 116686564 to 116686575 11 + TSS region transcription start site region 38546
Tssr38547 4 116686896 to 116686908 12 + TSS region transcription start site region 38547
Tssr38548 4 116687174 to 116687185 11 + TSS region transcription start site region 38548
Tssr38549 4 116687194 to 116687218 24 + TSS region transcription start site region 38549
Tssr38550 4 116687225 to 116687239 14 + TSS region transcription start site region 38550
Tssr38551 4 116687249 to 116687260 11 + TSS region transcription start site region 38551
Tssr38552 4 116687326 to 116687329 3 + TSS region transcription start site region 38552
Tssr38553 4 116687437 to 116687474 37 + TSS region transcription start site region 38553
Tssr38554 4 116687841 to 116687848 7 + TSS region transcription start site region 38554
Tssr38555 4 116689893 to 116689908 15 + TSS region transcription start site region 38555
Tssr38556 4 116690060 to 116690070 10 + TSS region transcription start site region 38556
Tssr38557 4 116690673 to 116690697 24 + TSS region transcription start site region 38557
Tssr38558 4 116691052 to 116691059 7 + TSS region transcription start site region 38558
Tssr38559 4 116691816 to 116691899 83 + TSS region transcription start site region 38559
Tssr38560 4 116691926 to 116691937 11 + TSS region transcription start site region 38560
Tssr38561 4 116693719 to 116693745 26 + TSS region transcription start site region 38561
Tssr38562 4 116693817 to 116693855 38 + TSS region transcription start site region 38562
Tssr38563 4 116693947 to 116693960 13 + TSS region transcription start site region 38563
Tssr38564 4 116694080 to 116694095 15 + TSS region transcription start site region 38564
Tssr38565 4 116694111 to 116694128 17 + TSS region transcription start site region 38565
Tssr38566 4 116696019 to 116696047 28 + TSS region transcription start site region 38566
9530001N24Rik 4 116697076 to 116697506 430 unclassified gene RIKEN cDNA 9530001N24 gene
Tssr38567 4 116699161 to 116699182 21 + TSS region transcription start site region 38567
Tssr38568 4 116699219 to 116699317 98 + TSS region transcription start site region 38568
Tssr38569 4 116699387 to 116699455 68 + TSS region transcription start site region 38569
Tssr164686 4 116699509 to 116699513 4 - TSS region transcription start site region 164686
Tssr38570 4 116700032 to 116700037 5 + TSS region transcription start site region 38570
Tssr38571 4 116701823 to 116701836 13 + TSS region transcription start site region 38571
Mmachc 4 116702434 to 116708385 5951 - protein coding gene methylmalonic aciduria cblC type, with homocystinuria
Tssr38572 4 116708122 to 116708133 11 + TSS region transcription start site region 38572
4930565M07Rik 4 116708124 to 116708431 307 unclassified gene RIKEN cDNA 4930565M07 gene
Cpgi14639 4 116708145 to 116708776 631 CpG island CpG island 14639
Tssr42924 4 116708262 to 116708269 7 - TSS region transcription start site region 42924
Tssr42925 4 116708312 to 116708356 44 - TSS region transcription start site region 42925
Tssr38573 4 116708467 to 116708472 5 + TSS region transcription start site region 38573
Tssr42926 4 116708540 to 116708555 15 - TSS region transcription start site region 42926
Tssr38574 4 116708575 to 116708584 9 + TSS region transcription start site region 38574
Ccdc163 4 116708583 to 116715104 6521 + protein coding gene coiled-coil domain containing 163
Tssr38575 4 116708587 to 116708604 17 + TSS region transcription start site region 38575
Tssr38576 4 116708624 to 116708635 11 + TSS region transcription start site region 38576
Tssr38577 4 116708687 to 116708696 9 + TSS region transcription start site region 38577
Tssr38578 4 116708701 to 116708712 11 + TSS region transcription start site region 38578
Tssr38579 4 116709234 to 116709239 5 + TSS region transcription start site region 38579
Tssr38580 4 116711901 to 116711905 4 + TSS region transcription start site region 38580
Cpgi14640 4 116720794 to 116721440 646 CpG island CpG island 14640
Tesk2 4 116720907 to 116804248 83341 + protein coding gene testis-specific kinase 2
Tssr38581 4 116720920 to 116721004 84 + TSS region transcription start site region 38581
Tssr38582 4 116721067 to 116721078 11 + TSS region transcription start site region 38582
Gm27688 4 116725899 to 116725989 90 + unclassified non-coding RNA gene predicted gene, 27688