Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:93515064-94446134

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr30415 3 93520369 to 93520391 22 + TSS region transcription start site region 30415
Tssr30416 3 93520473 to 93520501 28 + TSS region transcription start site region 30416
S100a11 3 93520496 to 93526288 5792 + protein coding gene S100 calcium binding protein A11
Cpgi13476 3 93520799 to 93520996 197 CpG island CpG island 13476
Tssr30417 3 93526054 to 93526090 36 + TSS region transcription start site region 30417
Gm29950 3 93530509 to 93530745 236 - pseudogene predicted gene, 29950
Tssr30418 3 93547940 to 93547951 11 + TSS region transcription start site region 30418
Cpgi13477 3 93555045 to 93555449 404 CpG island CpG island 13477
S100a10 3 93555080 to 93564643 9563 + protein coding gene S100 calcium binding protein A10 (calpactin)
Tssr30419 3 93555111 to 93555122 11 + TSS region transcription start site region 30419
Tssr30420 3 93555126 to 93555152 26 + TSS region transcription start site region 30420
Tssr30421 3 93555155 to 93555171 16 + TSS region transcription start site region 30421
Tssr30422 3 93560936 to 93560945 9 + TSS region transcription start site region 30422
Gm40093 3 93595359 to 93597504 2145 - lncRNA gene predicted gene, 40093
Gm18331 3 93605168 to 93605714 546 + pseudogene predicted gene, 18331
Gm5541 3 93628640 to 93629752 1112 - pseudogene predicted gene 5541
Gm38207 3 93638044 to 93641548 3504 + unclassified gene predicted gene, 38207
Tdpoz2 3 93651542 to 93652686 1144 - protein coding gene TD and POZ domain containing 2
Tdpoz1 3 93669333 to 93676283 6950 - protein coding gene TD and POZ domain containing 1
Gm9107 3 93691989 to 93693063 1074 - pseudogene predicted gene 9107
Gm37596 3 93692050 to 93693070 1020 - protein coding gene predicted gene, 37596
Gm18433 3 93707287 to 93708267 980 + pseudogene predicted gene, 18433
Gm38086 3 93724618 to 93725051 433 - pseudogene predicted gene, 38086
Gm5852 3 93727026 to 93728046 1020 - pseudogene predicted gene 5852
Gm5773 3 93773000 to 93774142 1142 + protein coding gene predicted pseudogene 5773
Tdpoz4 3 93796398 to 93797510 1112 + protein coding gene TD and POZ domain containing 4
Tssr30423 3 93820924 to 93820928 4 + TSS region transcription start site region 30423
Tdpoz3 3 93826020 to 93827117 1097 + protein coding gene TD and POZ domain containing 3
Gm37430 3 93871347 to 93871542 195 + pseudogene predicted gene, 37430
Gm9113 3 93873369 to 93874386 1017 - pseudogene predicted pseudogene 9113
Gm9116 3 93909825 to 93910842 1017 + pseudogene predicted gene 9116
Gm37185 3 93912843 to 93913252 409 + pseudogene predicted gene, 37185
Gm9117 3 93936626 to 93943516 6890 - protein coding gene predicted pseudogene 9117
Gm37104 3 93958071 to 93958266 195 + pseudogene predicted gene, 37104
Tdpoz5 3 93960292 to 93961314 1022 - protein coding gene TD and POZ domain containing 5
Gm37807 3 93969138 to 93969327 189 + pseudogene predicted gene, 37807
Gm37481 3 93977712 to 93978114 402 - pseudogene predicted gene, 37481
Gm9121 3 93980064 to 93981134 1070 - pseudogene predicted pseudogene 9121
Gm9124 3 94009931 to 94011022 1091 + pseudogene predicted pseudogene 9124
Gm37085 3 94012770 to 94012965 195 - pseudogene predicted gene, 37085
Tssr30424 3 94046721 to 94046722 1 + TSS region transcription start site region 30424
Gm9125 3 94047981 to 94054885 6904 - protein coding gene predicted gene 9125
Gm37081 3 94069404 to 94069599 195 + pseudogene predicted gene, 37081
Gm10697 3 94071622 to 94072644 1022 - protein coding gene predicted gene 10697
Gm37778 3 94079913 to 94080102 189 + pseudogene predicted gene, 37778
Gm37155 3 94088478 to 94088883 405 - pseudogene predicted gene, 37155
Gm5542 3 94090818 to 94091906 1088 - pseudogene predicted gene 5542
Gm9131 3 94119979 to 94121067 1088 + pseudogene predicted gene 9131
Gm37882 3 94122819 to 94123014 195 - pseudogene predicted gene, 37882
Gm5543 3 94157700 to 94158721 1021 - pseudogene predicted gene 5543
Gm37001 3 94166553 to 94166742 189 + pseudogene predicted gene, 37001
Gm20955 3 94166963 to 94169855 2892 - pseudogene predicted gene, 20955
Gm16560 3 94173080 to 94173483 403 - pseudogene predicted gene 16560
Gm10696 3 94174412 to 94178193 3781 - protein coding gene predicted gene 10696
Gm5286 3 94196714 to 94199802 3088 + protein coding gene predicted gene 5286
Gm16584 3 94201210 to 94201398 188 - pseudogene predicted gene 16584
Gm4982 3 94236702 to 94237799 1097 - pseudogene predicted gene 4982
Gm9141 3 94242464 to 94243470 1006 - pseudogene predicted gene 9141
D3Mit188 3 94246440 to 94246567 127 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 188
Gm4778 3 94264036 to 94266784 2748 + protein coding gene predicted gene 4778
Gm16561 3 94275233 to 94275424 191 - pseudogene predicted gene 16561
Gm36010 3 94277974 to 94309988 32014 - lncRNA gene predicted gene, 36010
Cpgi13478 3 94309758 to 94310476 718 CpG island CpG island 13478
Tssr30425 3 94310095 to 94310144 49 + TSS region transcription start site region 30425
Them4 3 94310108 to 94332540 22432 + protein coding gene thioesterase superfamily member 4
Tssr30426 3 94310155 to 94310171 16 + TSS region transcription start site region 30426
Tssr30427 3 94310237 to 94310270 33 + TSS region transcription start site region 30427
Gm43743 3 94334394 to 94335332 938 - pseudogene predicted gene 43743
Tssr30428 3 94342092 to 94342112 20 + TSS region transcription start site region 30428
Them5 3 94342099 to 94347352 5253 + protein coding gene thioesterase superfamily member 5
Tssr30429 3 94342117 to 94342124 7 + TSS region transcription start site region 30429
Tssr30430 3 94342139 to 94342144 5 + TSS region transcription start site region 30430
Gm36070 3 94356507 to 94360842 4335 - unclassified non-coding RNA gene predicted gene, 36070
C2cd4d 3 94362444 to 94364567 2123 + protein coding gene C2 calcium-dependent domain containing 4D
Cpgi13479 3 94363256 to 94364516 1260 CpG island CpG island 13479
Gm38411 3 94365535 to 94371023 5488 - antisense lncRNA gene predicted gene, 38411
Tssr34377 3 94369633 to 94369637 4 - TSS region transcription start site region 34377
Rorc 3 94372794 to 94398276 25482 + protein coding gene RAR-related orphan receptor gamma
Tssr30431 3 94372811 to 94372872 61 + TSS region transcription start site region 30431
Tssr30432 3 94372886 to 94372887 1 + TSS region transcription start site region 30432
Tssr34378 3 94375237 to 94375241 4 - TSS region transcription start site region 34378
Tssr34379 3 94377236 to 94377250 14 - TSS region transcription start site region 34379
Tssr34380 3 94377254 to 94377281 27 - TSS region transcription start site region 34380
Tssr34381 3 94377284 to 94377290 6 - TSS region transcription start site region 34381
Tssr30433 3 94377409 to 94377423 14 + TSS region transcription start site region 30433
Tssr30434 3 94377433 to 94377451 18 + TSS region transcription start site region 30434
Tssr30435 3 94377454 to 94377481 27 + TSS region transcription start site region 30435
Tssr30436 3 94377486 to 94377497 11 + TSS region transcription start site region 30436
Tssr30437 3 94377505 to 94377527 22 + TSS region transcription start site region 30437
Tssr30438 3 94377539 to 94377550 11 + TSS region transcription start site region 30438
Tssr30439 3 94385679 to 94385682 3 + TSS region transcription start site region 30439
Tssr30440 3 94386917 to 94386928 11 + TSS region transcription start site region 30440
Tssr30441 3 94386955 to 94386974 19 + TSS region transcription start site region 30441
Tssr30442 3 94387031 to 94387051 20 + TSS region transcription start site region 30442
Tssr34382 3 94388152 to 94388164 12 - TSS region transcription start site region 34382
Tssr30443 3 94388253 to 94388290 37 + TSS region transcription start site region 30443
Tssr30444 3 94388294 to 94388301 7 + TSS region transcription start site region 30444
Tssr30445 3 94392741 to 94392748 7 + TSS region transcription start site region 30445
Gm43401 3 94392971 to 94402848 9877 - antisense lncRNA gene predicted gene 43401
Tssr30446 3 94398535 to 94398538 3 + TSS region transcription start site region 30446
Cpgi13480 3 94399118 to 94399298 180 CpG island CpG island 13480
Lingo4 3 94399219 to 94404501 5282 + protein coding gene leucine rich repeat and Ig domain containing 4
Tssr30447 3 94399272 to 94399333 61 + TSS region transcription start site region 30447
1700040D17Rik 3 94409395 to 94412919 3524 - lincRNA gene RIKEN cDNA 1700040D17 gene
Cpgi13481 3 94412459 to 94413591 1132 CpG island CpG island 13481
Tssr34383 3 94412887 to 94412890 3 - TSS region transcription start site region 34383
Tssr30448 3 94413244 to 94413296 52 + TSS region transcription start site region 30448
Tdrkh 3 94413273 to 94434668 21395 + protein coding gene tudor and KH domain containing protein
Gm42463 3 94413401 to 94418286 4885 + sense intronic lncRNA gene predicted gene 42463
Tssr34384 3 94417954 to 94417956 2 - TSS region transcription start site region 34384
Gm42464 3 94421661 to 94422434 773 - pseudogene predicted gene 42464
Oaz3 3 94433387 to 94436651 3264 - protein coding gene ornithine decarboxylase antizyme 3
D3Umi3 3 94435736 to 94436175 439 DNA segment DNA segment, Chr 3, University of Michigan 3
Tssr34385 3 94435888 to 94435893 5 - TSS region transcription start site region 34385
Tssr34386 3 94436079 to 94436090 11 - TSS region transcription start site region 34386
Tssr34387 3 94436574 to 94436592 18 - TSS region transcription start site region 34387
Cpgi13482 3 94443125 to 94443920 795 CpG island CpG island 13482
Mrpl9 3 94443154 to 94448708 5554 + protein coding gene mitochondrial ribosomal protein L9
Tssr30449 3 94443286 to 94443295 9 + TSS region transcription start site region 30449
Tssr30450 3 94443315 to 94443345 30 + TSS region transcription start site region 30450