Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:107717789-108476432

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197 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40121 3 107696658 to 107812951 116293 + lncRNA gene predicted gene, 40121
Csf1 3 107741048 to 107760469 19421 - protein coding gene colony stimulating factor 1 (macrophage)
Tssr35081 3 107741466 to 107741496 30 - TSS region transcription start site region 35081
Tssr35082 3 107742558 to 107742595 37 - TSS region transcription start site region 35082
Tssr35083 3 107749074 to 107749096 22 - TSS region transcription start site region 35083
Tssr31213 3 107753780 to 107753801 21 + TSS region transcription start site region 31213
Tssr35084 3 107753811 to 107753839 28 - TSS region transcription start site region 35084
D3Mit104.3 3 107759348 to 107759457 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.3
D3Mit104 3 107759435 to 107759527 92 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104
D3Mit104.2 3 107759522 to 107759678 156 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.2
Cpgi13681 3 107759791 to 107760618 827 CpG island CpG island 13681
Tssr1014 3 107760172 to 107760182 10 - TSS region transcription start site region 1014
Tssr35085 3 107760187 to 107760227 40 - TSS region transcription start site region 35085
Tssr35086 3 107760234 to 107760249 15 - TSS region transcription start site region 35086
Tssr1015 3 107760258 to 107760282 24 - TSS region transcription start site region 1015
D3Mit104.1 3 107760371 to 107760614 243 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 104.1
Gm43233 3 107781856 to 107782471 615 + pseudogene predicted gene 43233
Tssr35087 3 107783466 to 107783470 4 - TSS region transcription start site region 35087
Gm36211 3 107820221 to 107833539 13318 - lincRNA gene predicted gene, 36211
Tssr35088 3 107829584 to 107829599 15 - TSS region transcription start site region 35088
Tssr35089 3 107852806 to 107852817 11 - TSS region transcription start site region 35089
Tssr1016 3 107852840 to 107852848 8 - TSS region transcription start site region 1016
Tssr1017 3 107852851 to 107852860 9 - TSS region transcription start site region 1017
Tssr31214 3 107853139 to 107853150 11 + TSS region transcription start site region 31214
Gm5075 3 107868022 to 107868643 621 - pseudogene predicted gene 5075
Cpgi13682 3 107868327 to 107868719 392 CpG island CpG island 13682
Cpgi13683 3 107873458 to 107873671 213 CpG island CpG island 13683
Tssr31215 3 107873842 to 107873877 35 + TSS region transcription start site region 31215
Tssr31216 3 107873880 to 107873887 7 + TSS region transcription start site region 31216
Tssr31217 3 107873898 to 107873904 6 + TSS region transcription start site region 31217
Tssr31218 3 107874794 to 107874796 2 + TSS region transcription start site region 31218
4930554G22Rik 3 107874795 to 107875480 685 + unclassified gene RIKEN cDNA 4930554G22 gene
Tssr31219 3 107877105 to 107877123 18 + TSS region transcription start site region 31219
Tssr31220 3 107877227 to 107877252 25 + TSS region transcription start site region 31220
Eps8l3 3 107877229 to 107892900 15671 + protein coding gene EPS8-like 3
Tssr31221 3 107884786 to 107884811 25 + TSS region transcription start site region 31221
Tssr31222 3 107885934 to 107885939 5 + TSS region transcription start site region 31222
Gm43745 3 107885966 to 107887848 1882 + unclassified gene predicted gene 43745
4933431E20Rik 3 107888850 to 107896213 7363 - antisense lncRNA gene RIKEN cDNA 4933431E20 gene
Cpgi13684 3 107895632 to 107896355 723 CpG island CpG island 13684
Tssr35090 3 107895743 to 107895750 7 - TSS region transcription start site region 35090
Tssr35091 3 107895754 to 107895805 51 - TSS region transcription start site region 35091
Tssr35092 3 107895806 to 107895817 11 - TSS region transcription start site region 35092
Tssr31223 3 107895831 to 107895844 13 + TSS region transcription start site region 31223
Tssr31224 3 107895849 to 107895901 52 + TSS region transcription start site region 31224
Gstm5 3 107895854 to 107898685 2831 + protein coding gene glutathione S-transferase, mu 5
Tssr31225 3 107895912 to 107895913 1 + TSS region transcription start site region 31225
Tssr31226 3 107895916 to 107895931 15 + TSS region transcription start site region 31226
Tssr31227 3 107896265 to 107896314 49 + TSS region transcription start site region 31227
Tssr31228 3 107897283 to 107897313 30 + TSS region transcription start site region 31228
Gm9515 3 107908796 to 107911320 2524 - pseudogene predicted gene 9515
Tssr35093 3 107911278 to 107911300 22 - TSS region transcription start site region 35093
Gm12489 3 107919662 to 107919809 147 + pseudogene predicted gene 12489
Gstm7 3 107926334 to 107931817 5483 - protein coding gene glutathione S-transferase, mu 7
Tssr35094 3 107928999 to 107929008 9 - TSS region transcription start site region 35094
Tssr35095 3 107931657 to 107931742 85 - TSS region transcription start site region 35095
Tssr35096 3 107931746 to 107931762 16 - TSS region transcription start site region 35096
Tssr35097 3 107931860 to 107931885 25 - TSS region transcription start site region 35097
Gstm6 3 107938847 to 107943749 4902 - protein coding gene glutathione S-transferase, mu 6
Tssr35098 3 107943332 to 107943348 16 - TSS region transcription start site region 35098
Tssr35099 3 107943349 to 107943360 11 - TSS region transcription start site region 35099
Tssr35100 3 107943363 to 107943379 16 - TSS region transcription start site region 35100
Tssr35101 3 107943390 to 107943421 31 - TSS region transcription start site region 35101
Tssr35102 3 107943683 to 107943699 16 - TSS region transcription start site region 35102
Tssr35103 3 107943705 to 107943741 36 - TSS region transcription start site region 35103
Gm12494 3 107950795 to 107953121 2326 - pseudogene predicted gene 12494
Gstm3 3 107963696 to 107969174 5478 - protein coding gene glutathione S-transferase, mu 3
Tssr35104 3 107969162 to 107969177 15 - TSS region transcription start site region 35104
Tssr31229 3 107979600 to 107979613 13 + TSS region transcription start site region 31229
Gm12497 3 107979632 to 107979868 236 + pseudogene predicted pseudogene 12497
Gstm2 3 107981702 to 107986436 4734 - protein coding gene glutathione S-transferase, mu 2
Tssr35105 3 107984629 to 107984640 11 - TSS region transcription start site region 35105
Tssr35106 3 107986397 to 107986399 2 - TSS region transcription start site region 35106
Tssr35107 3 107986408 to 107986466 58 - TSS region transcription start site region 35107
Gm43746 3 107999443 to 107999845 402 - pseudogene predicted gene 43746
Gstm1 3 108012255 to 108017973 5718 - protein coding gene glutathione S-transferase, mu 1
Tssr35108 3 108012447 to 108012462 15 - TSS region transcription start site region 35108
Tssr35109 3 108012559 to 108012572 13 - TSS region transcription start site region 35109
Tssr35110 3 108012670 to 108012709 39 - TSS region transcription start site region 35110
Tssr35111 3 108012735 to 108012776 41 - TSS region transcription start site region 35111
Cpgi13685 3 108017419 to 108018207 788 CpG island CpG island 13685
Tssr35112 3 108017431 to 108017441 10 - TSS region transcription start site region 35112
Tssr35113 3 108017442 to 108017458 16 - TSS region transcription start site region 35113
Tssr35114 3 108017460 to 108017470 10 - TSS region transcription start site region 35114
Tssr35115 3 108017655 to 108017662 7 - TSS region transcription start site region 35115
Tssr35116 3 108017811 to 108017826 15 - TSS region transcription start site region 35116
Tssr35117 3 108017843 to 108017862 19 - TSS region transcription start site region 35117
Tssr35118 3 108017877 to 108017884 7 - TSS region transcription start site region 35118
Gm12502 3 108019885 to 108020328 443 + pseudogene predicted gene 12502
Gm12498 3 108020417 to 108025943 5526 - lincRNA gene predicted gene 12498
D3Mit285 3 108024847 to 108024956 109 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 285
Gm12499 3 108029600 to 108031361 1761 - pseudogene predicted gene 12499
Gm36498 3 108030832 to 108036961 6129 - lncRNA gene predicted gene, 36498
Gm25592 3 108034026 to 108034156 130 + snoRNA gene predicted gene, 25592
Gstm4 3 108040408 to 108044894 4486 - protein coding gene glutathione S-transferase, mu 4
Tssr35119 3 108044685 to 108044738 53 - TSS region transcription start site region 35119
Cpgi13686 3 108044687 to 108045057 370 CpG island CpG island 13686
Tssr35120 3 108044801 to 108044882 81 - TSS region transcription start site region 35120
Ampd2 3 108074062 to 108086651 12589 - protein coding gene adenosine monophosphate deaminase 2
Tssr35121 3 108081142 to 108081144 2 - TSS region transcription start site region 35121
Tssr35122 3 108082392 to 108082424 32 - TSS region transcription start site region 35122
Cpgi13687 3 108085117 to 108085523 406 CpG island CpG island 13687
Tssr35123 3 108085346 to 108085412 66 - TSS region transcription start site region 35123
Tssr35124 3 108085422 to 108085438 16 - TSS region transcription start site region 35124
Gm12500 3 108085590 to 108088011 2421 + antisense lncRNA gene predicted gene 12500
Tssr31230 3 108086029 to 108086055 26 + TSS region transcription start site region 31230
Cpgi13688 3 108086236 to 108086818 582 CpG island CpG island 13688
Tssr35125 3 108086590 to 108086707 117 - TSS region transcription start site region 35125
Etohcta4 3 108092789 to 108101432 8643 QTL ethanol conditioned taste aversion 4
Gnat2 3 108092789 to 108101432 8643 + protein coding gene guanine nucleotide binding protein, alpha transducing 2
Tssr31231 3 108092851 to 108092858 7 + TSS region transcription start site region 31231
Tssr31232 3 108093052 to 108093062 10 + TSS region transcription start site region 31232
Tssr31233 3 108093109 to 108093120 11 + TSS region transcription start site region 31233
Gnai3 3 108107280 to 108146146 38866 - protein coding gene guanine nucleotide binding protein (G protein), alpha inhibiting 3
Tssr35126 3 108121180 to 108121189 9 - TSS region transcription start site region 35126
Tssr35127 3 108134688 to 108134692 4 - TSS region transcription start site region 35127
Cpgi13689 3 108134873 to 108135025 152 CpG island CpG island 13689
Cpgi13690 3 108145655 to 108146396 741 CpG island CpG island 13690
Tssr35128 3 108146080 to 108146150 70 - TSS region transcription start site region 35128
Tssr1018 3 108146175 to 108146196 21 + TSS region transcription start site region 1018
Tssr31234 3 108146200 to 108146223 23 + TSS region transcription start site region 31234
Gpr61 3 108148321 to 108154882 6561 - protein coding gene G protein-coupled receptor 61
Cpgi13691 3 108150456 to 108150914 458 CpG island CpG island 13691
Tssr35129 3 108154871 to 108154908 37 - TSS region transcription start site region 35129
Gm12524 3 108166443 to 108185907 19464 + lincRNA gene predicted gene 12524
Gm40122 3 108172661 to 108175370 2709 - lncRNA gene predicted gene, 40122
Cpgi13692 3 108185990 to 108187301 1311 CpG island CpG island 13692
Tssr31235 3 108186332 to 108186407 75 + TSS region transcription start site region 31235
Amigo1 3 108186335 to 108192286 5951 + protein coding gene adhesion molecule with Ig like domain 1
Tssr31236 3 108186410 to 108186424 14 + TSS region transcription start site region 31236
Cyb561d1 3 108195687 to 108201212 5525 - protein coding gene cytochrome b-561 domain containing 1
Tssr1019 3 108199916 to 108199926 10 + TSS region transcription start site region 1019
Tssr35130 3 108200415 to 108200445 30 - TSS region transcription start site region 35130
Cpgi13693 3 108200459 to 108201077 618 CpG island CpG island 13693
Tssr31237 3 108200599 to 108200629 30 + TSS region transcription start site region 31237
Tssr35131 3 108200807 to 108200858 51 - TSS region transcription start site region 35131
Atxn7l2 3 108202222 to 108210527 8305 - protein coding gene ataxin 7-like 2
Cpgi13694 3 108209869 to 108211233 1364 CpG island CpG island 13694
Tssr35132 3 108210438 to 108210502 64 - TSS region transcription start site region 35132
Sypl2 3 108211472 to 108226648 15176 - protein coding gene synaptophysin-like 2
Tssr35133 3 108213649 to 108213657 8 - TSS region transcription start site region 35133
Tssr35134 3 108217686 to 108217717 31 - TSS region transcription start site region 35134
Cpgi13695 3 108225837 to 108226918 1081 CpG island CpG island 13695
Tssr35135 3 108226573 to 108226589 16 - TSS region transcription start site region 35135
Tssr35136 3 108226598 to 108226683 85 - TSS region transcription start site region 35136
Gm40123 3 108226808 to 108239470 12662 + lincRNA gene predicted gene, 40123
Gm12501 3 108239383 to 108239911 528 - pseudogene predicted gene 12501
Cpgi13696 3 108239553 to 108240192 639 CpG island CpG island 13696
1700010K24Rik 3 108248909 to 108256985 8076 - antisense lncRNA gene RIKEN cDNA 1700010K24 gene
Cpgi13697 3 108256681 to 108257643 962 CpG island CpG island 13697
Tssr35137 3 108256804 to 108256841 37 - TSS region transcription start site region 35137
Psma5 3 108256926 to 108279952 23026 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 5
Tssr35138 3 108256980 to 108257030 50 - TSS region transcription start site region 35138
Tssr1020 3 108257138 to 108257141 3 + TSS region transcription start site region 1020
Tssr31238 3 108257160 to 108257171 11 + TSS region transcription start site region 31238
Cpgi13698 3 108283355 to 108284877 1522 CpG island CpG island 13698
Gm12523 3 108283898 to 108284843 945 - antisense lncRNA gene predicted gene 12523
Tssr31239 3 108284063 to 108284074 11 + TSS region transcription start site region 31239
Sort1 3 108284082 to 108361511 77429 + protein coding gene sortilin 1
Tssr31240 3 108284089 to 108284100 11 + TSS region transcription start site region 31240
Tssr31241 3 108284103 to 108284142 39 + TSS region transcription start site region 31241
Tssr35139 3 108284537 to 108284547 10 - TSS region transcription start site region 35139
Tssr35140 3 108284550 to 108284579 29 - TSS region transcription start site region 35140
Tssr35141 3 108284613 to 108284622 9 - TSS region transcription start site region 35141
Gm43099 3 108287881 to 108293121 5240 + unclassified gene predicted gene 43099
Tssr31242 3 108312905 to 108312930 25 + TSS region transcription start site region 31242
Gm12525 3 108361551 to 108362256 705 + lincRNA gene predicted gene 12525
Tssr31243 3 108364882 to 108364911 29 + TSS region transcription start site region 31243
Mybphl 3 108364911 to 108380057 15146 + protein coding gene myosin binding protein H-like
Tssr31244 3 108364913 to 108364943 30 + TSS region transcription start site region 31244
Tssr31245 3 108364976 to 108364988 12 + TSS region transcription start site region 31245
Gm12522 3 108379277 to 108383741 4464 - lncRNA gene predicted gene 12522
Tssr35142 3 108382500 to 108382541 41 - TSS region transcription start site region 35142
Cpgi13699 3 108383466 to 108384136 670 CpG island CpG island 13699
Tssr31246 3 108383829 to 108383886 57 + TSS region transcription start site region 31246
Psrc1 3 108383839 to 108388231 4392 + protein coding gene proline/serine-rich coiled-coil 1
Tssr31247 3 108383887 to 108383898 11 + TSS region transcription start site region 31247
Tssr31248 3 108383983 to 108384001 18 + TSS region transcription start site region 31248
Tssr31249 3 108384005 to 108384017 12 + TSS region transcription start site region 31249
Celsr2 3 108390851 to 108415552 24701 - protein coding gene cadherin, EGF LAG seven-pass G-type receptor 2
Cpgi13700 3 108406828 to 108407366 538 CpG island CpG island 13700
Cpgi13701 3 108414906 to 108416389 1483 CpG island CpG island 13701
Tssr31250 3 108415979 to 108415989 10 + TSS region transcription start site region 31250
Tssr35143 3 108416011 to 108416050 39 - TSS region transcription start site region 35143
Tssr35144 3 108416052 to 108416066 14 - TSS region transcription start site region 35144
Sars 3 108424865 to 108445209 20344 - protein coding gene seryl-aminoacyl-tRNA synthetase
Tssr35145 3 108439681 to 108439686 5 - TSS region transcription start site region 35145
Gm22942 3 108441330 to 108441453 123 + snoRNA gene predicted gene, 22942
Tssr31251 3 108444274 to 108444297 23 + TSS region transcription start site region 31251
Cpgi13702 3 108444704 to 108445378 674 CpG island CpG island 13702
Tssr35146 3 108445147 to 108445178 31 - TSS region transcription start site region 35146
Tssr35147 3 108445183 to 108445211 28 - TSS region transcription start site region 35147
D3Mit105 3 108450602 to 108450714 112 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 105
Gm43438 3 108451270 to 108451648 378 - pseudogene predicted gene 43438
5330417C22Rik 3 108455694 to 108536536 80842 - protein coding gene RIKEN cDNA 5330417C22 gene
Tssr35148 3 108475016 to 108475034 18 - TSS region transcription start site region 35148
Tssr35149 3 108475046 to 108475066 20 - TSS region transcription start site region 35149