Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 3:101381789-102009632

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igsf3 3 101377114 to 101463060 85946 + protein coding gene immunoglobulin superfamily, member 3
D3Mit312 3 101400619 to 101400741 122 DNA segment DNA Segment, Chr 3, Massachusetts Institute of Technology 312
Gm42939 3 101407793 to 101409997 2204 + sense intronic lncRNA gene predicted gene 42939
Gm42938 3 101411539 to 101412610 1071 + sense intronic lncRNA gene predicted gene 42938
Tssr987 3 101424122 to 101424125 3 + TSS region transcription start site region 987
Gm42538 3 101424615 to 101426936 2321 - antisense lncRNA gene predicted gene 42538
Tssr34789 3 101426958 to 101426975 17 - TSS region transcription start site region 34789
Tssr30903 3 101427027 to 101427075 48 + TSS region transcription start site region 30903
Tssr988 3 101428846 to 101428850 4 + TSS region transcription start site region 988
Tssr30904 3 101460614 to 101460624 10 + TSS region transcription start site region 30904
Tssr30905 3 101462069 to 101462092 23 + TSS region transcription start site region 30905
Gm40109 3 101501927 to 101507846 5919 - lncRNA gene predicted gene, 40109
Gm33162 3 101511555 to 101536250 24695 - lncRNA gene predicted gene, 33162
Tssr30906 3 101527046 to 101527056 10 + TSS region transcription start site region 30906
Tssr34790 3 101536435 to 101536446 11 - TSS region transcription start site region 34790
Tssr34791 3 101538940 to 101538941 1 - TSS region transcription start site region 34791
Atp1a1 3 101576219 to 101604684 28465 - protein coding gene ATPase, Na+/K+ transporting, alpha 1 polypeptide
Tssr34792 3 101576362 to 101576376 14 - TSS region transcription start site region 34792
Gm42937 3 101580304 to 101581055 751 - sense intronic lncRNA gene predicted gene 42937
Tssr34793 3 101582076 to 101582103 27 - TSS region transcription start site region 34793
Tssr34794 3 101582133 to 101582152 19 - TSS region transcription start site region 34794
Tssr34795 3 101583812 to 101583833 21 - TSS region transcription start site region 34795
Tssr30907 3 101586244 to 101586271 27 + TSS region transcription start site region 30907
Tssr34796 3 101592435 to 101592447 12 - TSS region transcription start site region 34796
Tssr34797 3 101592458 to 101592473 15 - TSS region transcription start site region 34797
Tssr34798 3 101592488 to 101592499 11 - TSS region transcription start site region 34798
Tssr34799 3 101592506 to 101592547 41 - TSS region transcription start site region 34799
Tssr34800 3 101592573 to 101592584 11 - TSS region transcription start site region 34800
Tssr34801 3 101595088 to 101595115 27 - TSS region transcription start site region 34801
Gm42941 3 101595810 to 101597130 1320 - sense intronic lncRNA gene predicted gene 42941
Tssr30908 3 101600611 to 101600633 22 + TSS region transcription start site region 30908
Cpgi13620 3 101603884 to 101605226 1342 CpG island CpG island 13620
Tssr989 3 101604428 to 101604453 25 + TSS region transcription start site region 989
Tssr34802 3 101604539 to 101604552 13 - TSS region transcription start site region 34802
Tssr34803 3 101604580 to 101604629 49 - TSS region transcription start site region 34803
Tssr34804 3 101604649 to 101604654 5 - TSS region transcription start site region 34804
Tssr34805 3 101604655 to 101604689 34 - TSS region transcription start site region 34805
Tssr34806 3 101604693 to 101604715 22 - TSS region transcription start site region 34806
Tssr34807 3 101605168 to 101605190 22 - TSS region transcription start site region 34807
Tssr990 3 101606940 to 101606943 3 + TSS region transcription start site region 990
Gm33215 3 101634049 to 101650797 16748 - lncRNA gene predicted gene, 33215
Tssr30909 3 101634772 to 101634774 2 + TSS region transcription start site region 30909
Gm33265 3 101659087 to 101667301 8214 - lncRNA gene predicted gene, 33265
Tssr30910 3 101667601 to 101667624 23 + TSS region transcription start site region 30910
Gm43135 3 101691789 to 101699632 7843 + lincRNA gene predicted gene 43135
Gm33309 3 101727135 to 101737539 10404 - lncRNA gene predicted gene, 33309
D3Mit191 3 101731586 to 101731734 148 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 191
Gm43134 3 101748124 to 101750009 1885 + lincRNA gene predicted gene 43134
Cpgi13621 3 101806308 to 101806481 173 CpG island CpG island 13621
Mab21l3 3 101813076 to 101836726 23650 - protein coding gene mab-21-like 3
Gm33381 3 101826881 to 101834987 8106 + lncRNA gene predicted gene, 33381
Tssr34808 3 101836146 to 101836177 31 - TSS region transcription start site region 34808
Tssr34809 3 101836181 to 101836210 29 - TSS region transcription start site region 34809
Tssr34810 3 101836227 to 101836237 10 - TSS region transcription start site region 34810
Slc22a15 3 101855776 to 101924453 68677 - protein coding gene solute carrier family 22 (organic anion/cation transporter), member 15
Cpgi13622 3 101923760 to 101924811 1051 CpG island CpG island 13622
Tssr34811 3 101924196 to 101924215 19 - TSS region transcription start site region 34811
Tssr34812 3 101924280 to 101924299 19 - TSS region transcription start site region 34812
Tssr34813 3 101924378 to 101924408 30 - TSS region transcription start site region 34813
Tssr34814 3 101924420 to 101924454 34 - TSS region transcription start site region 34814
Tssr34815 3 101924468 to 101924492 24 - TSS region transcription start site region 34815
Tssr34816 3 101924508 to 101924520 12 - TSS region transcription start site region 34816
Tssr34817 3 101924524 to 101924545 21 - TSS region transcription start site region 34817
Tssr34818 3 101924629 to 101924640 11 - TSS region transcription start site region 34818
Cq3 3 101981602 to 101981751 149 QTL cholesterol QTL 3
D3Mit102 3 101981602 to 101981751 149 DNA segment DNA segment, Chr 3, Massachusetts Institute of Technology 102