Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:75434614-75834618

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi11818 2 75434687 to 75435174 487 CpG island CpG island 11818
9430019J16Rik 2 75436057 to 75444179 8122 - lncRNA gene RIKEN cDNA 9430019J16 gene
Gm13658 2 75436057 to 75444179 8122 + lincRNA gene predicted gene 13658
Gm13660 2 75458966 to 75464788 5822 - lincRNA gene predicted gene 13660
Tssr24638 2 75467812 to 75467824 12 - TSS region transcription start site region 24638
Tssr18451 2 75482126 to 75482132 6 + TSS region transcription start site region 18451
Gm39854 2 75508949 to 75515027 6078 + lncRNA gene predicted gene, 39854
D2Dcr136 2 75513277 to 75513379 102 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 136
Tssr18452 2 75582446 to 75582449 3 + TSS region transcription start site region 18452
Cpgi11819 2 75589536 to 75589739 203 CpG island CpG island 11819
Cpgi11820 2 75593541 to 75593840 299 CpG island CpG island 11820
Cpgi11821 2 75609677 to 75610082 405 CpG island CpG island 11821
Gm39853 2 75613386 to 75615353 1967 + lncRNA gene predicted gene, 39853
Gm13655 2 75632638 to 75633382 744 - pseudogene predicted gene 13655
Tssr24639 2 75633532 to 75633543 11 - TSS region transcription start site region 24639
Tssr24640 2 75633544 to 75633557 13 - TSS region transcription start site region 24640
Tssr24641 2 75633580 to 75633594 14 - TSS region transcription start site region 24641
Tssr24642 2 75633852 to 75633863 11 - TSS region transcription start site region 24642
Tssr18453 2 75633973 to 75634005 32 + TSS region transcription start site region 18453
Tssr18454 2 75634011 to 75634042 31 + TSS region transcription start site region 18454
Gm39858 2 75634015 to 75634375 360 + lncRNA gene predicted gene, 39858
Tssr18455 2 75634056 to 75634067 11 + TSS region transcription start site region 18455
Tssr18456 2 75634614 to 75634618 4 + TSS region transcription start site region 18456
Gm39859 2 75651173 to 75659182 8009 - lncRNA gene predicted gene, 39859
Cpgi11822 2 75658575 to 75660080 1505 CpG island CpG island 11822
Tssr24643 2 75658886 to 75658959 73 - TSS region transcription start site region 24643
Tssr18457 2 75659056 to 75659091 35 + TSS region transcription start site region 18457
Tssr18458 2 75659092 to 75659108 16 + TSS region transcription start site region 18458
Gm24574 2 75659244 to 75659317 73 + miRNA gene predicted gene, 24574
Tssr18459 2 75659253 to 75659266 13 + TSS region transcription start site region 18459
Hnrnpa3 2 75659261 to 75669407 10146 + protein coding gene heterogeneous nuclear ribonucleoprotein A3
Tssr24644 2 75659775 to 75659817 42 - TSS region transcription start site region 24644
Nfe2l2 2 75675513 to 75704641 29128 - protein coding gene nuclear factor, erythroid derived 2, like 2
Tssr24645 2 75676238 to 75676272 34 - TSS region transcription start site region 24645
Tssr24646 2 75676390 to 75676402 12 - TSS region transcription start site region 24646
Tssr24647 2 75676528 to 75676553 25 - TSS region transcription start site region 24647
Tssr24648 2 75676633 to 75676650 17 - TSS region transcription start site region 24648
Tssr24649 2 75677578 to 75677593 15 - TSS region transcription start site region 24649
Tssr24650 2 75679392 to 75679405 13 - TSS region transcription start site region 24650
Tssr24651 2 75679411 to 75679432 21 - TSS region transcription start site region 24651
Tssr18460 2 75683199 to 75683211 12 + TSS region transcription start site region 18460
Tssr24652 2 75685504 to 75685523 19 - TSS region transcription start site region 24652
Gm24996 2 75686740 to 75686838 98 - snRNA gene predicted gene, 24996
Tssr24653 2 75690608 to 75690610 2 - TSS region transcription start site region 24653
Cpgi11823 2 75703381 to 75705413 2032 CpG island CpG island 11823
Tssr24654 2 75703975 to 75703991 16 - TSS region transcription start site region 24654
Tssr18461 2 75704129 to 75704140 11 + TSS region transcription start site region 18461
Tssr537 2 75704398 to 75704402 4 - TSS region transcription start site region 537
Tssr538 2 75704428 to 75704441 13 - TSS region transcription start site region 538
Tssr24655 2 75704470 to 75704533 63 - TSS region transcription start site region 24655
Tssr24656 2 75704535 to 75704552 17 - TSS region transcription start site region 24656
Tssr539 2 75704596 to 75704614 18 - TSS region transcription start site region 539
Tssr540 2 75704644 to 75704679 35 - TSS region transcription start site region 540
E030042O20Rik 2 75704770 to 75710024 5254 + unclassified non-coding RNA gene RIKEN cDNA E030042O20 gene
Tssr18462 2 75704851 to 75704880 29 + TSS region transcription start site region 18462
Tssr24657 2 75705013 to 75705022 9 - TSS region transcription start site region 24657
Tssr24658 2 75705032 to 75705065 33 - TSS region transcription start site region 24658
Tssr24659 2 75705104 to 75705116 12 - TSS region transcription start site region 24659
Gm46749 2 75706071 to 75713229 7158 - lncRNA gene predicted gene, 46749
Tssr24660 2 75713020 to 75713039 19 - TSS region transcription start site region 24660
Tssr18463 2 75715044 to 75715049 5 + TSS region transcription start site region 18463
Tssr18464 2 75720947 to 75720950 3 + TSS region transcription start site region 18464
Tssr18465 2 75729528 to 75729533 5 + TSS region transcription start site region 18465
Gm13656 2 75729592 to 75730172 580 - lincRNA gene predicted gene 13656
Tssr24661 2 75768023 to 75768028 5 - TSS region transcription start site region 24661
Gm34657 2 75768831 to 75771659 2828 + lncRNA gene predicted gene, 34657
Tssr18466 2 75768924 to 75768925 1 + TSS region transcription start site region 18466
Tssr18467 2 75773804 to 75773809 5 + TSS region transcription start site region 18467
Tssr18468 2 75777175 to 75777193 18 + TSS region transcription start site region 18468
Gm13657 2 75777188 to 75782306 5118 + lncRNA gene predicted gene 13657
Tssr24662 2 75782004 to 75782021 17 - TSS region transcription start site region 24662
Tssr18469 2 75808246 to 75808270 24 + TSS region transcription start site region 18469
Gm13669 2 75808358 to 75808814 456 + pseudogene predicted gene 13669
Gm34861 2 75814018 to 75832126 18108 - lncRNA gene predicted gene, 34861
Gm13670 2 75822028 to 75822793 765 - pseudogene predicted gene 13670
D2Dcr137 2 75828671 to 75828766 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 137
Cpgi11824 2 75831724 to 75832781 1057 CpG island CpG island 11824
Tssr18470 2 75832134 to 75832141 7 + TSS region transcription start site region 18470
Tssr18471 2 75832168 to 75832194 26 + TSS region transcription start site region 18471
Agps 2 75832177 to 75931350 99173 + protein coding gene alkylglycerone phosphate synthase
Tssr18472 2 75832237 to 75832284 47 + TSS region transcription start site region 18472
Tssr18473 2 75832332 to 75832343 11 + TSS region transcription start site region 18473
Tssr18474 2 75832452 to 75832461 9 + TSS region transcription start site region 18474
Tssr18475 2 75832462 to 75832473 11 + TSS region transcription start site region 18475