Gene symbol | Chromo- some |
Coordinates (bp, mm10) | Size (bp) | Strand | Feature Type | Gene name |
---|---|---|---|---|---|---|
Aips2 | 2 | 9762815 | QTL | autoimmune pancreatitis severity 2 | ||
In(2Hoxd11;Itga6)1Ddu | 2 | 2900130 | chromosomal inversion | inversion, Chr 2, Denis Duboule 1 | ||
In(2Lnp-Itga6)47Ddu | 2 | 2792549 | chromosomal inversion | inversion, Chr 2, Denis Duboule 47 | ||
In(2Itga6-Evx2)44Ddu | 2 | 2872671 | chromosomal inversion | inversion, Chr 2, Denis Duboule 44 | ||
Del(2Evx2-Atf2)53Ddu | 2 | 843048 | chromosomal deletion | deletion, Chr 2, Denis Duboule 53 | ||
Dp(2Lnp-Atf2)60Ddu | 2 | 762926 | chromosomal duplication | duplication, Chr 2, Denis Duboule 60 | ||
Dp(2Evx2-Atf2)59Ddu | 2 | 843048 | chromosomal duplication | duplication, Chr 2, Denis Duboule 59 | ||
D2Tfv6 | 2 | 119 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 6 | ||
Tssr24605 | 2 | 28 | - | TSS region | transcription start site region 24605 | |
Lnpk | 2 | 59144 | - | protein coding gene | lunapark, ER junction formation factor | |
Tssr24606 | 2 | 11 | - | TSS region | transcription start site region 24606 | |
Tssr24607 | 2 | 21 | - | TSS region | transcription start site region 24607 | |
Tssr24608 | 2 | 6 | - | TSS region | transcription start site region 24608 | |
Tssr24609 | 2 | 13 | - | TSS region | transcription start site region 24609 | |
Cpgi11782 | 2 | 1171 | CpG island | CpG island 11782 | ||
Tssr24610 | 2 | 79 | - | TSS region | transcription start site region 24610 | |
Tssr18388 | 2 | 9 | + | TSS region | transcription start site region 18388 | |
4930445N08Rik | 2 | 5468 | + | antisense lncRNA gene | RIKEN cDNA 4930445N08 gene | |
Tssr24611 | 2 | 10 | - | TSS region | transcription start site region 24611 | |
Tssr24612 | 2 | 30 | - | TSS region | transcription start site region 24612 | |
Tssr24613 | 2 | 3 | - | TSS region | transcription start site region 24613 | |
Mrpl23-ps1 | 2 | 543 | - | pseudogene | mitichondrial ribosomal protein L23, pseudogene 1 | |
Tssr24614 | 2 | 17 | - | TSS region | transcription start site region 24614 | |
Gm39852 | 2 | 8087 | - | lncRNA gene | predicted gene, 39852 | |
Tssr24615 | 2 | 22 | - | TSS region | transcription start site region 24615 | |
Tssr24616 | 2 | 9 | - | TSS region | transcription start site region 24616 | |
Gm22975 | 2 | 106 | + | snRNA gene | predicted gene, 22975 | |
Gm13672 | 2 | 458 | + | pseudogene | predicted gene 13672 | |
Evx2 | 2 | 6566 | - | protein coding gene | even-skipped homeobox 2 | |
Cpgi11783 | 2 | 1778 | CpG island | CpG island 11783 | ||
Cpgi11784 | 2 | 770 | CpG island | CpG island 11784 | ||
D2Tfv7 | 2 | 229 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 7 | ||
Cpgi11785 | 2 | 1226 | CpG island | CpG island 11785 | ||
Tssr24617 | 2 | 13 | - | TSS region | transcription start site region 24617 | |
Tssr24618 | 2 | 11 | - | TSS region | transcription start site region 24618 | |
Tssr24619 | 2 | 13 | - | TSS region | transcription start site region 24619 | |
Cpgi11786 | 2 | 323 | CpG island | CpG island 11786 | ||
Tssr24620 | 2 | 7 | - | TSS region | transcription start site region 24620 | |
Tssr24621 | 2 | 9 | - | TSS region | transcription start site region 24621 | |
Gm31790 | 2 | 5340 | + | lncRNA gene | predicted gene, 31790 | |
Cpgi11787 | 2 | 259 | CpG island | CpG island 11787 | ||
Cpgi11788 | 2 | 231 | CpG island | CpG island 11788 | ||
Tssr18389 | 2 | 6 | + | TSS region | transcription start site region 18389 | |
Cpgi11789 | 2 | 1459 | CpG island | CpG island 11789 | ||
Tssr18390 | 2 | 22 | + | TSS region | transcription start site region 18390 | |
Hoxd13 | 2 | 3289 | + | protein coding gene | homeobox D13 | |
Del(2Hoxd12-Hoxd13)6Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 6 | ||
Del(2Hoxd10-Hoxd13)10Ddu | 2 | 26795 | chromosomal deletion | deletion, Chr 2, Denis Duboule 10 | ||
Del(2Hoxd10-Hoxd13)38Ddu | 2 | 26795 | chromosomal deletion | deletion, Chr 2, Denis Duboule 38 | ||
Del(2Hoxd10-Hoxd13)7Ddu | 2 | 26795 | chromosomal deletion | deletion, Chr 2, Denis Duboule 7 | ||
Del(2Hoxd11-Hoxd13)16Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 16 | ||
Del(2Hoxd11-Hoxd13)27Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 27 | ||
Del(2Hoxd11-Hoxd13)29Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 29 | ||
Del(2Hoxd11-Hoxd13)2Ddu | 2 | 18706 | chromosomal deletion | deletion, Chr 2, Denis Duboule 1 | ||
Del(2Hoxd12-Hoxd13)35Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 35 | ||
Del(2Hoxd12-Hoxd13)41Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 41 | ||
Del(2Hoxd12-Hoxd13)5Ddu | 2 | 9395 | chromosomal deletion | deletion, Chr 2, Denis Duboule 5 | ||
Del(2Hoxd1-Hoxd13)12Ddu | 2 | 96832 | chromosomal deletion | deletion, Chr 2, Denis Duboule 12 | ||
Dp(2Hoxd11-Hoxd13)4Ddu | 2 | 18706 | chromosomal duplication | duplication, Chr 2, Denis Duboule 4 | ||
Del(2Hoxd9-Hoxd13)8Ddu | 2 | 31898 | chromosomal deletion | deletion, Chr 2, Denis Duboule 8 | ||
Del(2Hoxd8-Hoxd13)9Ddu | 2 | 39623 | chromosomal deletion | deletion, Chr 2, Denis Duboule 9 | ||
Del(2Hoxd8-Hoxd13)11Ddu | 2 | 39623 | chromosomal deletion | deletion, Chr 2, Denis Duboule 11 | ||
Del(2Hoxd4-Hoxd13)30Ddu | 2 | 60850 | chromosomal deletion | deletion, Chr 2, Denis Duboule 30 | ||
Del(2Hoxd4-Hoxd13)28Ddu | 2 | 60850 | chromosomal deletion | deletion, Chr 2, Denis Duboule 28 | ||
Del(2Hoxd1-Hoxd13)54Ddu | 2 | 96832 | chromosomal deletion | deletion, Chr 2, Denis Duboule 54 | ||
Del(2Hoxd1-Hoxd13)1Ddu | 2 | 96832 | complex/cluster/region | deletion, Chr 2, Denis Duboule 1 | ||
Cpgi11790 | 2 | 619 | CpG island | CpG island 11790 | ||
Cpgi11791 | 2 | 392 | CpG island | CpG island 11791 | ||
Tssr532 | 2 | 24 | + | TSS region | transcription start site region 532 | |
Tssr18391 | 2 | 3 | + | TSS region | transcription start site region 18391 | |
Tssr18392 | 2 | 25 | + | TSS region | transcription start site region 18392 | |
Del(2Hoxd9-Hoxd12)20Ddu | 2 | 25195 | chromosomal deletion | deletion, Chr 2, Denis Duboule 20 | ||
Dp(2Hoxd11-Hoxd12)5Ddu | 2 | 12003 | chromosomal duplication | duplication, Chr 2, Denis Duboule 5 | ||
Del(2Hoxd10-Hoxd12)19Ddu | 2 | 20092 | chromosomal deletion | deletion, Chr 2, Denis Duboule 19 | ||
Del(2Hoxd11-Hoxd12)34Ddu | 2 | 12003 | chromosomal deletion | deletion, Chr 2, Denis Duboule 34 | ||
Hoxd12 | 2 | 2692 | + | protein coding gene | homeobox D12 | |
Tssr18393 | 2 | 18 | + | TSS region | transcription start site region 18393 | |
Cpgi11792 | 2 | 968 | CpG island | CpG island 11792 | ||
Tssr18394 | 2 | 10 | + | TSS region | transcription start site region 18394 | |
Tssr18395 | 2 | 12 | + | TSS region | transcription start site region 18395 | |
Hoxd11 | 2 | 7458 | + | protein coding gene | homeobox D11 | |
Del(2Hoxd4-Hoxd11)36Ddu | 2 | 49602 | chromosomal deletion | deletion, Chr 2, Denis Duboule 36 | ||
Del(2Hoxd10-Hoxd11)32Ddu | 2 | 15547 | chromosomal deletion | deletion, Chr 2, Denis Duboule 32 | ||
Cpgi11793 | 2 | 1186 | CpG island | CpG island 11793 | ||
Tssr18396 | 2 | 13 | + | TSS region | transcription start site region 18396 | |
Tssr18397 | 2 | 16 | + | TSS region | transcription start site region 18397 | |
Tssr18398 | 2 | 31 | + | TSS region | transcription start site region 18398 | |
Cpgi11794 | 2 | 2398 | CpG island | CpG island 11794 | ||
Tssr18399 | 2 | 16 | + | TSS region | transcription start site region 18399 | |
Tssr18400 | 2 | 12 | + | TSS region | transcription start site region 18400 | |
Tssr18401 | 2 | 40 | + | TSS region | transcription start site region 18401 | |
Gm28309 | 2 | 10748 | + | unclassified non-coding RNA gene | predicted gene 28309 | |
Tssr18402 | 2 | 9 | + | TSS region | transcription start site region 18402 | |
Tssr18403 | 2 | 11 | + | TSS region | transcription start site region 18403 | |
Tssr18404 | 2 | 8 | + | TSS region | transcription start site region 18404 | |
D2Mit271 | 2 | 140 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 271 | ||
D2Tfv9 | 2 | 144 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 9 | ||
Tssr18405 | 2 | 4 | + | TSS region | transcription start site region 18405 | |
Cpgi11795 | 2 | 591 | CpG island | CpG island 11795 | ||
Cpgi11796 | 2 | 787 | CpG island | CpG island 11796 | ||
Tssr24622 | 2 | 21 | - | TSS region | transcription start site region 24622 | |
Tssr18406 | 2 | 9 | + | TSS region | transcription start site region 18406 | |
Tssr18407 | 2 | 11 | + | TSS region | transcription start site region 18407 | |
Tssr18408 | 2 | 27 | + | TSS region | transcription start site region 18408 | |
Del(2Hoxd9-Hoxd10)14Ddu | 2 | 8284 | chromosomal deletion | deletion, Chr 2, Denis Duboule 14 | ||
Del(2Hoxd1-Hoxd10)26Ddu | 2 | 73218 | chromosomal deletion | deletion, Chr 2, Denis Duboule 26 | ||
Dp(2Hoxd8-Hoxd10)1Ddu | 2 | 16009 | chromosomal duplication | duplication, Chr 2, Denis Duboule 1 | ||
Del(2Hoxd8-Hoxd10)15Ddu | 2 | 16009 | chromosomal deletion | deletion, Chr 2, Denis Duboule 15 | ||
Del(2Hoxd8-Hoxd10)21Ddu | 2 | 16009 | chromosomal deletion | deletion, Chr 2, Denis Duboule 21 | ||
Hoxd10 | 2 | 3181 | + | protein coding gene | homeobox D10 | |
Tssr18409 | 2 | 22 | + | TSS region | transcription start site region 18409 | |
Tssr18410 | 2 | 11 | + | TSS region | transcription start site region 18410 | |
Tssr18411 | 2 | 23 | + | TSS region | transcription start site region 18411 | |
Cpgi11797 | 2 | 553 | CpG island | CpG island 11797 | ||
D2Mit37 | 2 | 171 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 37 | ||
Alpq2 | 2 | 171 | QTL | alcohol preference QTL 2 | ||
Tssr18412 | 2 | 18 | + | TSS region | transcription start site region 18412 | |
Tssr18413 | 2 | 22 | + | TSS region | transcription start site region 18413 | |
Gm14396 | 2 | 1845 | + | lincRNA gene | predicted gene 14396 | |
D2Mit35 | 2 | 139 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 35 | ||
Cpgi11798 | 2 | 269 | CpG island | CpG island 11798 | ||
Gm28793 | 2 | 818 | - | antisense lncRNA gene | predicted gene 28793 | |
D2Mit38.1 | 2 | 182 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 38.1 | ||
D2Tfv10 | 2 | 272 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 10 | ||
D2Mit36 | 2 | 227 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 36 | ||
D2Mit38 | 2 | 190 | DNA segment | DNA segment, Chr 2, Massachusetts Institute of Technology 38 | ||
Cpgi11799 | 2 | 1842 | CpG island | CpG island 11799 | ||
Tssr18414 | 2 | 11 | + | TSS region | transcription start site region 18414 | |
Tssr18415 | 2 | 12 | + | TSS region | transcription start site region 18415 | |
Del(2Hoxd4-Hoxd9)40Ddu | 2 | 31397 | chromosomal deletion | deletion, Chr 2, Denis Duboule 40 | ||
Del(2Hoxd8-Hoxd9)18Ddu | 2 | 10170 | chromosomal deletion | deletion, Chr 2, Denis Duboule 18 | ||
Del(2Hoxd8-Hoxd9)22Ddu | 2 | 10170 | chromosomal deletion | deletion, Chr 2, Denis Duboule 22 | ||
Dp(2Hoxd8-Hoxd9)2Ddu | 2 | 10170 | chromosomal duplication | duplication, Chr 2, Denis Duboule 2 | ||
Del(2Hoxd1-Hoxd9)63Ddu | 2 | 67379 | chromosomal deletion | deletion, Chr 2, Denis Duboule 63 | ||
Hoxd9 | 2 | 2445 | + | protein coding gene | homeobox D9 | |
Tssr18416 | 2 | 5 | + | TSS region | transcription start site region 18416 | |
Tssr18417 | 2 | 13 | + | TSS region | transcription start site region 18417 | |
Tssr18418 | 2 | 15 | + | TSS region | transcription start site region 18418 | |
Tssr18419 | 2 | 12 | + | TSS region | transcription start site region 18419 | |
D2Tfv11 | 2 | 187 | DNA segment | DNA segment, Chr 2, Thomas F. Vogt 11 | ||
Gm44463 | 2 | 136 | - | miRNA gene | predicted gene, 44463 | |
Gm38462 | 2 | 9060 | - | protein coding gene | predicted gene, 38462 | |
Cpgi11800 | 2 | 2232 | CpG island | CpG island 11800 | ||
Tssr18420 | 2 | 13 | + | TSS region | transcription start site region 18420 | |
Hoxd8 | 2 | 3318 | + | protein coding gene | homeobox D8 | |
Tssr18421 | 2 | 25 | + | TSS region | transcription start site region 18421 | |
Tssr18422 | 2 | 12 | + | TSS region | transcription start site region 18422 | |
Tssr18423 | 2 | 53 | + | TSS region | transcription start site region 18423 | |
Tssr18424 | 2 | 12 | + | TSS region | transcription start site region 18424 | |
Tssr18425 | 2 | 32 | + | TSS region | transcription start site region 18425 | |
Tssr18426 | 2 | 15 | + | TSS region | transcription start site region 18426 | |
Tssr18427 | 2 | 11 | + | TSS region | transcription start site region 18427 | |
Tssr18428 | 2 | 11 | + | TSS region | transcription start site region 18428 | |
Tssr18429 | 2 | 38 | + | TSS region | transcription start site region 18429 | |
Tssr18430 | 2 | 31 | + | TSS region | transcription start site region 18430 | |
Tssr24623 | 2 | 18 | - | TSS region | transcription start site region 24623 | |
Tssr18431 | 2 | 1 | + | TSS region | transcription start site region 18431 | |
Hoxd3os1 | 2 | 6086 | - | antisense lncRNA gene | homeobox D3, opposite strand 1 | |
Cpgi11801 | 2 | 852 | CpG island | CpG island 11801 | ||
Tssr18432 | 2 | 15 | + | TSS region | transcription start site region 18432 | |
Tssr18433 | 2 | 20 | + | TSS region | transcription start site region 18433 | |
Tssr18434 | 2 | 28 | + | TSS region | transcription start site region 18434 | |
Tssr18435 | 2 | 42 | + | TSS region | transcription start site region 18435 | |
Hoxd3 | 2 | 36278 | + | protein coding gene | homeobox D3 | |
Tssr18436 | 2 | 36 | + | TSS region | transcription start site region 18436 | |
Tssr24624 | 2 | 33 | - | TSS region | transcription start site region 24624 | |
Cpgi11802 | 2 | 241 | CpG island | CpG island 11802 | ||
Cpgi11803 | 2 | 373 | CpG island | CpG island 11803 | ||
Tssr533 | 2 | 3 | - | TSS region | transcription start site region 533 | |
Tssr24625 | 2 | 11 | - | TSS region | transcription start site region 24625 | |
Tssr534 | 2 | 5 | - | TSS region | transcription start site region 534 | |
Tssr24626 | 2 | 7 | - | TSS region | transcription start site region 24626 | |
Tssr24627 | 2 | 11 | - | TSS region | transcription start site region 24627 | |
Tssr24628 | 2 | 20 | - | TSS region | transcription start site region 24628 | |
Tssr18437 | 2 | 7 | + | TSS region | transcription start site region 18437 | |
Del(2Hoxd1-Hoxd4)56Ddu | 2 | 43164 | chromosomal deletion | deletion, Chr 2, Denis Duboule 56 | ||
Del(2Hoxd1-Hoxd4)55Ddu | 2 | 43164 | chromosomal deletion | deletion, Chr 2, Denis Duboule 55 | ||
Hoxd4 | 2 | 7182 | + | protein coding gene | homeobox D4 | |
Tssr18438 | 2 | 22 | + | TSS region | transcription start site region 18438 | |
Cpgi11804 | 2 | 337 | CpG island | CpG island 11804 | ||
Cpgi11805 | 2 | 304 | CpG island | CpG island 11805 | ||
Mir10b | 2 | 67 | + | miRNA gene | microRNA 10b | |
Gm28230 | 2 | 21190 | + | protein coding gene | predicted gene 28230 | |
Tssr18439 | 2 | 11 | + | TSS region | transcription start site region 18439 | |
Cpgi11806 | 2 | 612 | CpG island | CpG island 11806 | ||
Tssr18440 | 2 | 21 | + | TSS region | transcription start site region 18440 | |
Tssr18441 | 2 | 4 | + | TSS region | transcription start site region 18441 | |
AI448005 | 2 | 416 | unclassified gene | expressed sequence AI448005 | ||
Cpgi11807 | 2 | 879 | CpG island | CpG island 11807 | ||
Cpgi11808 | 2 | 288 | CpG island | CpG island 11808 | ||
Cpgi11809 | 2 | 601 | CpG island | CpG island 11809 | ||
Tssr535 | 2 | 39 | + | TSS region | transcription start site region 535 | |
Cpgi11810 | 2 | 426 | CpG island | CpG island 11810 | ||
Tssr18442 | 2 | 5 | + | TSS region | transcription start site region 18442 | |
Tssr18443 | 2 | 9 | + | TSS region | transcription start site region 18443 | |
Tssr18444 | 2 | 39 | + | TSS region | transcription start site region 18444 | |
Cpgi11811 | 2 | 1464 | CpG island | CpG island 11811 | ||
Haglr | 2 | 14474 | - | bidirectional promoter lncRNA gene | Hoxd antisense growth associated long non-coding RNA | |
Cpgi11812 | 2 | 963 | CpG island | CpG island 11812 | ||
Cpgi11813 | 2 | 1129 | CpG island | CpG island 11813 |