Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:73325288-73835353

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scrn3 2 73312652 to 73337818 25166 + protein coding gene secernin 3
Gpr155 2 73341506 to 73386572 45066 - protein coding gene G protein-coupled receptor 155
Tssr24542 2 73351940 to 73351963 23 - TSS region transcription start site region 24542
Cpgi11773 2 73356882 to 73357217 335 CpG island CpG island 11773
Gm13703 2 73357268 to 73364333 7065 + antisense lncRNA gene predicted gene 13703
Gm13709 2 73370909 to 73379297 8388 + antisense lncRNA gene predicted gene 13709
Cpgi11774 2 73385878 to 73386964 1086 CpG island CpG island 11774
Tssr24543 2 73386330 to 73386343 13 - TSS region transcription start site region 24543
Tssr24544 2 73386363 to 73386382 19 - TSS region transcription start site region 24544
Tssr24545 2 73386396 to 73386479 83 - TSS region transcription start site region 24545
D230022J07Rik 2 73386970 to 73420498 33528 + unclassified non-coding RNA gene RIKEN cDNA D230022J07 gene
Tssr24546 2 73394287 to 73394299 12 - TSS region transcription start site region 24546
Gm13707 2 73421909 to 73429142 7233 + antisense lncRNA gene predicted gene 13707
Wipf1 2 73429610 to 73529726 100116 - protein coding gene WAS/WASL interacting protein family, member 1
Tssr24547 2 73434982 to 73435014 32 - TSS region transcription start site region 24547
Tssr24548 2 73437214 to 73437236 22 - TSS region transcription start site region 24548
Tssr24549 2 73437310 to 73437331 21 - TSS region transcription start site region 24549
Tssr24550 2 73437523 to 73437541 18 - TSS region transcription start site region 24550
Tssr24551 2 73437592 to 73437607 15 - TSS region transcription start site region 24551
Tssr24552 2 73440043 to 73440058 15 - TSS region transcription start site region 24552
Tssr18378 2 73450590 to 73450612 22 + TSS region transcription start site region 18378
Tssr24553 2 73452666 to 73452712 46 - TSS region transcription start site region 24553
Tssr18379 2 73452796 to 73452809 13 + TSS region transcription start site region 18379
Tssr18380 2 73452824 to 73452834 10 + TSS region transcription start site region 18380
Tssr24554 2 73453869 to 73453884 15 - TSS region transcription start site region 24554
Tssr24555 2 73453888 to 73453900 12 - TSS region transcription start site region 24555
Tssr24556 2 73453918 to 73453933 15 - TSS region transcription start site region 24556
Tssr24557 2 73454820 to 73454827 7 - TSS region transcription start site region 24557
Tssr24558 2 73459667 to 73459682 15 - TSS region transcription start site region 24558
Gm13708 2 73459705 to 73477602 17897 + lincRNA gene predicted gene 13708
Tssr24559 2 73462429 to 73462448 19 - TSS region transcription start site region 24559
Tssr24560 2 73463914 to 73463925 11 - TSS region transcription start site region 24560
Cpgi11775 2 73485245 to 73485745 500 CpG island CpG island 11775
Tssr18381 2 73485327 to 73485331 4 + TSS region transcription start site region 18381
Tssr24561 2 73485682 to 73485704 22 - TSS region transcription start site region 24561
Tssr24562 2 73485712 to 73485730 18 - TSS region transcription start site region 24562
Tssr24563 2 73485733 to 73485769 36 - TSS region transcription start site region 24563
Tssr24564 2 73486405 to 73486418 13 - TSS region transcription start site region 24564
Tssr24565 2 73486435 to 73486451 16 - TSS region transcription start site region 24565
Tssr24566 2 73486456 to 73486461 5 - TSS region transcription start site region 24566
Tssr24567 2 73486465 to 73486477 12 - TSS region transcription start site region 24567
C130023C23Rik 2 73490229 to 73494293 4064 unclassified non-coding RNA gene Riken cDNA C130023C23 gene
Cpgi11776 2 73528819 to 73529942 1123 CpG island CpG island 11776
Tssr24568 2 73529391 to 73529493 102 - TSS region transcription start site region 24568
Tssr24569 2 73529545 to 73529569 24 - TSS region transcription start site region 24569
Tssr24570 2 73529708 to 73529721 13 - TSS region transcription start site region 24570
Tssr24571 2 73529725 to 73529736 11 - TSS region transcription start site region 24571
Cpgi11777 2 73560939 to 73561118 179 CpG island CpG island 11777
Tssr18382 2 73561068 to 73561090 22 + TSS region transcription start site region 18382
Tssr18383 2 73561102 to 73561111 9 + TSS region transcription start site region 18383
Tssr530 2 73561114 to 73561121 7 + TSS region transcription start site region 530
Gm30940 2 73561186 to 73565378 4192 + lncRNA gene predicted gene, 30940
Chrna1 2 73563281 to 73580338 17057 - protein coding gene cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)
Tssr24572 2 73580288 to 73580353 65 - TSS region transcription start site region 24572
Tssr18384 2 73584835 to 73584891 56 + TSS region transcription start site region 18384
Chrna1os 2 73584850 to 73589208 4358 + antisense lncRNA gene cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle), opposite strand
Chn1os3 2 73596526 to 73616012 19486 + antisense lncRNA gene chimerin 1, opposite strand 3
Chn1 2 73610660 to 73775346 164686 - protein coding gene chimerin 1
Tssr24573 2 73625692 to 73625725 33 - TSS region transcription start site region 24573
Tssr24574 2 73625731 to 73625744 13 - TSS region transcription start site region 24574
Tssr24575 2 73637835 to 73637837 2 - TSS region transcription start site region 24575
Chn1os1 2 73658270 to 73660263 1993 + antisense lncRNA gene chimerin 1, opposite strand 1
Tssr24576 2 73659757 to 73659769 12 - TSS region transcription start site region 24576
Tssr24577 2 73659878 to 73659892 14 - TSS region transcription start site region 24577
Tssr24578 2 73659997 to 73660067 70 - TSS region transcription start site region 24578
Tssr24579 2 73660096 to 73660110 14 - TSS region transcription start site region 24579
Tssr24580 2 73660351 to 73660397 46 - TSS region transcription start site region 24580
Tssr24581 2 73660401 to 73660410 9 - TSS region transcription start site region 24581
Tssr531 2 73660420 to 73660425 5 - TSS region transcription start site region 531
Tssr24582 2 73721938 to 73721969 31 - TSS region transcription start site region 24582
Tssr18385 2 73764864 to 73764872 8 + TSS region transcription start site region 18385
Cpgi11778 2 73774622 to 73775923 1301 CpG island CpG island 11778
Tssr24583 2 73775059 to 73775140 81 - TSS region transcription start site region 24583
Tssr24584 2 73775251 to 73775262 11 - TSS region transcription start site region 24584
Tssr24585 2 73775308 to 73775319 11 - TSS region transcription start site region 24585
Tssr24586 2 73775341 to 73775378 37 - TSS region transcription start site region 24586
Tssr24587 2 73808980 to 73809012 32 - TSS region transcription start site region 24587
Gm13640 2 73809162 to 73809425 263 + pseudogene predicted gene 13640
Dp(2Lnp-Atf2)60Ddu 2 73816509 to 74579435 762926 chromosomal duplication duplication, Chr 2, Denis Duboule 60
Dp(2Evx2-Atf2)59Ddu 2 73816509 to 74659557 843048 chromosomal duplication duplication, Chr 2, Denis Duboule 59
Del(2Evx2-Atf2)53Ddu 2 73816509 to 74659557 843048 chromosomal deletion deletion, Chr 2, Denis Duboule 53
Atf2 2 73816509 to 73892639 76130 - protein coding gene activating transcription factor 2
Gm27421 2 73827665 to 73827831 166 - unclassified non-coding RNA gene predicted gene, 27421