Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:127477068-128107704

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnip3 2 127456498 to 127522094 65596 - protein coding gene Kv channel interacting protein 3, calsenilin
Cpgi12223 2 127481745 to 127483422 1677 CpG island CpG island 12223
Tssr26121 2 127482541 to 127482577 36 - TSS region transcription start site region 26121
Tssr20022 2 127483627 to 127483633 6 + TSS region transcription start site region 20022
Cpgi12224 2 127484282 to 127484752 470 CpG island CpG island 12224
Tssr26122 2 127511109 to 127511120 11 - TSS region transcription start site region 26122
Tssr26123 2 127511135 to 127511140 5 - TSS region transcription start site region 26123
Tssr20023 2 127514743 to 127514756 13 + TSS region transcription start site region 20023
Tssr26124 2 127521273 to 127521282 9 - TSS region transcription start site region 26124
Tssr26125 2 127521306 to 127521322 16 - TSS region transcription start site region 26125
Tssr26126 2 127521331 to 127521357 26 - TSS region transcription start site region 26126
Tssr26127 2 127521358 to 127521375 17 - TSS region transcription start site region 26127
Gm35478 2 127521561 to 127531815 10254 + lncRNA gene predicted gene, 35478
Prom2 2 127526953 to 127541417 14464 - protein coding gene prominin 2
Tssr26128 2 127538980 to 127538999 19 - TSS region transcription start site region 26128
Cpgi12225 2 127541061 to 127541620 559 CpG island CpG island 12225
Tssr26129 2 127541389 to 127541405 16 - TSS region transcription start site region 26129
Tssr26130 2 127541412 to 127541454 42 - TSS region transcription start site region 26130
Gm14229 2 127568577 to 127569426 849 - pseudogene predicted gene 14229
Zfp661 2 127574662 to 127587094 12432 - protein coding gene zinc finger protein 661
Cpgi12226 2 127584348 to 127584906 558 CpG island CpG island 12226
Tssr26131 2 127584668 to 127584703 35 - TSS region transcription start site region 26131
Cpgi12227 2 127587061 to 127588024 963 CpG island CpG island 12227
Tssr20024 2 127587214 to 127587263 49 + TSS region transcription start site region 20024
Tssr20025 2 127587268 to 127587279 11 + TSS region transcription start site region 20025
Tssr20026 2 127587395 to 127587430 35 + TSS region transcription start site region 20026
Mrps5 2 127587426 to 127603986 16560 + protein coding gene mitochondrial ribosomal protein S5
Tssr20027 2 127590321 to 127590369 48 + TSS region transcription start site region 20027
Tssr20028 2 127590742 to 127590759 17 + TSS region transcription start site region 20028
Mal 2 127633226 to 127656695 23469 - protein coding gene myelin and lymphocyte protein, T cell differentiation protein
Tssr26132 2 127633600 to 127633617 17 - TSS region transcription start site region 26132
D2Mit278 2 127647738 to 127647887 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 278
Bbaa15 2 127647738 to 127647887 149 QTL B.burgdorferi-associated arthritis 15
Cpgi12228 2 127656018 to 127656679 661 CpG island CpG island 12228
Tssr26133 2 127656157 to 127656166 9 - TSS region transcription start site region 26133
Tssr26134 2 127656182 to 127656196 14 - TSS region transcription start site region 26134
Tssr26135 2 127656209 to 127656232 23 - TSS region transcription start site region 26135
Tssr26136 2 127656245 to 127656256 11 - TSS region transcription start site region 26136
Gm22889 2 127677670 to 127677727 57 + snoRNA gene predicted gene, 22889
Gm14245 2 127688405 to 127690247 1842 + pseudogene predicted gene 14245
Tssr20029 2 127691831 to 127691842 11 + TSS region transcription start site region 20029
Tssr20030 2 127691846 to 127691878 32 + TSS region transcription start site region 20030
Tssr20031 2 127691893 to 127691906 13 + TSS region transcription start site region 20031
Gm14244 2 127691899 to 127700488 8589 + antisense lncRNA gene predicted gene 14244
Tssr20032 2 127695857 to 127695875 18 + TSS region transcription start site region 20032
Tssr20033 2 127695898 to 127695903 5 + TSS region transcription start site region 20033
Tssr20034 2 127702413 to 127702421 8 + TSS region transcription start site region 20034
D2Dcr72 2 127702508 to 127702609 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 72
Mall 2 127704390 to 127729897 25507 - protein coding gene mal, T cell differentiation protein-like
Tssr26137 2 127705485 to 127705515 30 - TSS region transcription start site region 26137
Tssr26138 2 127705667 to 127705681 14 - TSS region transcription start site region 26138
Tssr26139 2 127705746 to 127705753 7 - TSS region transcription start site region 26139
Tssr26140 2 127705769 to 127705780 11 - TSS region transcription start site region 26140
Cpgi12229 2 127729652 to 127730065 413 CpG island CpG island 12229
Tssr26141 2 127729872 to 127729936 64 - TSS region transcription start site region 26141
Nphp1 2 127740732 to 127788897 48165 - protein coding gene nephronophthisis 1 (juvenile) homolog (human)
Tssr26142 2 127744513 to 127744560 47 - TSS region transcription start site region 26142
Tssr26143 2 127755717 to 127755718 1 - TSS region transcription start site region 26143
Cpgi12230 2 127788580 to 127788969 389 CpG island CpG island 12230
Tssr26144 2 127788854 to 127788900 46 - TSS region transcription start site region 26144
Mtln 2 127791388 to 127792488 1100 - protein coding gene mitoregulin
Cpgi12231 2 127792068 to 127792704 636 CpG island CpG island 12231
Tssr26145 2 127792467 to 127792505 38 - TSS region transcription start site region 26145
Bub1 2 127801122 to 127831865 30743 - protein coding gene BUB1, mitotic checkpoint serine/threonine kinase
Tssr26146 2 127811888 to 127811905 17 - TSS region transcription start site region 26146
Cpgi12232 2 127831430 to 127832076 646 CpG island CpG island 12232
Tssr26147 2 127831817 to 127831875 58 - TSS region transcription start site region 26147
Tssr20035 2 127838784 to 127838799 15 + TSS region transcription start site region 20035
Tssr20036 2 127838814 to 127838836 22 + TSS region transcription start site region 20036
Acoxl 2 127838876 to 128123873 284997 + protein coding gene acyl-Coenzyme A oxidase-like
Gm22411 2 127891988 to 127892113 125 + miRNA gene predicted gene, 22411
Gm19501 2 127909591 to 127911285 1694 + unclassified gene predicted gene, 19501
0610042E11Rik 2 127920241 to 127922792 2551 unclassified gene RIKEN cDNA 0610042E11 gene
Tssr26148 2 127975630 to 127975653 23 - TSS region transcription start site region 26148
Tssr20037 2 128015183 to 128015187 4 + TSS region transcription start site region 20037
Tssr26149 2 128054962 to 128054967 5 - TSS region transcription start site region 26149
Tssr20038 2 128055171 to 128055184 13 + TSS region transcription start site region 20038
Tssr20039 2 128055191 to 128055202 11 + TSS region transcription start site region 20039
Tssr20040 2 128063100 to 128063109 9 + TSS region transcription start site region 20040
Tssr20041 2 128063121 to 128063139 18 + TSS region transcription start site region 20041
Gm23101 2 128089924 to 128090060 136 + snRNA gene predicted gene, 23101