Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:123237679-125202331

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbvq2 2 115600000 to 124900000 9300000 QTL trabecular bone volume QTL 2
Gm13988 2 123273924 to 123274211 287 + pseudogene predicted gene 13988
D2Mit164 2 123390053 to 123390195 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 164
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
D2Dcr68 2 123390095 to 123390214 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 68
D2Mit255 2 123391660 to 123391809 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 255
Pbrgcsf1 2 123391660 to 123391809 149 QTL peripheral blood stem cell response to granulocyte colony stimulating factor 1
D2Mit277 2 123430095 to 123430371 276 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 277
Tssr629 2 123487613 to 123487620 7 - TSS region transcription start site region 629
Gm39919 2 123774494 to 123798418 23924 - lncRNA gene predicted gene, 39919
D2Mit446 2 124038907 to 124039028 121 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 446
D2Mit485 2 124069227 to 124069350 123 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 485
Cpgi12189 2 124089777 to 124091054 1277 CpG island CpG island 12189
Tssr19870 2 124089961 to 124090018 57 + TSS region transcription start site region 19870
Sema6d 2 124089969 to 124667770 577801 + protein coding gene sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D
4930517E11Rik 2 124123636 to 124129956 6320 - lincRNA gene RIKEN cDNA 4930517E11 gene
Tssr630 2 124174431 to 124174433 2 + TSS region transcription start site region 630
4930583P06Rik 2 124217679 to 124222331 4652 - lincRNA gene RIKEN cDNA 4930583P06 gene
Tssr25991 2 124222355 to 124222375 20 - TSS region transcription start site region 25991
Bw25 2 124413756 to 124413756 0 QTL body weight QTL 25
Tssr25992 2 124490181 to 124490183 2 - TSS region transcription start site region 25992
Cpgi12190 2 124609682 to 124611058 1376 CpG island CpG island 12190
Tssr19871 2 124609881 to 124609904 23 + TSS region transcription start site region 19871
Tssr631 2 124610068 to 124610131 63 + TSS region transcription start site region 631
Tssr19872 2 124610278 to 124610285 7 + TSS region transcription start site region 19872
Tssr19873 2 124610422 to 124610436 14 + TSS region transcription start site region 19873
Tssr19874 2 124610592 to 124610613 21 + TSS region transcription start site region 19874
Tssr19875 2 124649342 to 124649348 6 + TSS region transcription start site region 19875
Gm34484 2 124705850 to 124720962 15112 - lncRNA gene predicted gene, 34484
Gm13994 2 124708655 to 124711083 2428 + lincRNA gene predicted gene 13994
Tssr25993 2 124711095 to 124711106 11 - TSS region transcription start site region 25993
Tssr25994 2 124711537 to 124711542 5 - TSS region transcription start site region 25994
D2Mit16a 2 124727634 to 124727860 226 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16a
D2Mit16b 2 124727695 to 124727860 165 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16b
D2Mit16.1 2 124727844 to 124727971 127 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 16.1
Gm39920 2 124730386 to 124788925 58539 - lncRNA gene predicted gene, 39920
D2Mit337 2 124751798 to 124751921 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 337
D2Dcr69 2 124815209 to 124815307 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 69
Tssr19876 2 125018893 to 125018895 2 + TSS region transcription start site region 19876
Tssr19877 2 125068118 to 125068133 15 + TSS region transcription start site region 19877
Slc24a5 2 125068127 to 125088677 20550 + protein coding gene solute carrier family 24, member 5
Tssr19878 2 125068148 to 125068163 15 + TSS region transcription start site region 19878
Myef2 2 125084628 to 125123661 39033 - protein coding gene myelin basic protein expression factor 2, repressor
Tssr25995 2 125088671 to 125088678 7 - TSS region transcription start site region 25995
Tssr25996 2 125100888 to 125100892 4 - TSS region transcription start site region 25996
Gm22352 2 125105009 to 125105115 106 + snRNA gene predicted gene, 22352
Cpgi12191 2 125122884 to 125124127 1243 CpG island CpG island 12191
Tssr25997 2 125123581 to 125123617 36 - TSS region transcription start site region 25997
Tssr25998 2 125123618 to 125123648 30 - TSS region transcription start site region 25998
Gm46759 2 125123724 to 125126217 2493 + lncRNA gene predicted gene, 46759
Gm14004 2 125124356 to 125134327 9971 - unclassified non-coding RNA gene predicted gene 14004
Cpgi12192 2 125136263 to 125136772 509 CpG island CpG island 12192
Tssr19879 2 125136598 to 125136623 25 + TSS region transcription start site region 19879
Ctxn2 2 125136692 to 125147839 11147 + protein coding gene cortexin 2
Tssr19880 2 125136748 to 125136769 21 + TSS region transcription start site region 19880
Tssr19881 2 125151834 to 125151846 12 + TSS region transcription start site region 19881
Tssr19882 2 125152592 to 125152606 14 + TSS region transcription start site region 19882
Slc12a1 2 125152600 to 125230002 77402 + protein coding gene solute carrier family 12, member 1
Tssr19883 2 125154021 to 125154032 11 + TSS region transcription start site region 19883
Cpgi12193 2 125154157 to 125154404 247 CpG island CpG island 12193
Tssr19884 2 125158428 to 125158429 1 + TSS region transcription start site region 19884
Tssr19885 2 125158920 to 125158937 17 + TSS region transcription start site region 19885
Tssr19886 2 125161306 to 125161309 3 + TSS region transcription start site region 19886
Tssr19887 2 125162992 to 125163001 9 + TSS region transcription start site region 19887
Tssr19888 2 125164806 to 125164808 2 + TSS region transcription start site region 19888
Cpgi12194 2 125186321 to 125186536 215 CpG island CpG island 12194
Tssr19889 2 125188980 to 125188987 7 + TSS region transcription start site region 19889
Gm46760 2 125195148 to 125203407 8259 - lncRNA gene predicted gene, 46760