Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:115208725-116068813

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm28494 2 114897916 to 115220708 322792 - lincRNA gene predicted gene 28494
4930528P14Rik 2 115329266 to 115344280 15014 - lincRNA gene RIKEN cDNA 4930528P14 gene
Gm18967 2 115333183 to 115333743 560 + pseudogene predicted gene, 18967
4930546E12Rik 2 115333947 to 115334537 590 unclassified gene RIKEN cDNA 4930546E12 gene
Tssr25708 2 115344276 to 115344283 7 - TSS region transcription start site region 25708
Tssr25709 2 115344287 to 115344297 10 - TSS region transcription start site region 25709
Gm13976 2 115344385 to 115346968 2583 + lincRNA gene predicted gene 13976
Gm31351 2 115371171 to 115379216 8045 - lncRNA gene predicted gene, 31351
Gm31413 2 115380093 to 115383357 3264 - lncRNA gene predicted gene, 31413
Gm39910 2 115402078 to 115410267 8189 - lncRNA gene predicted gene, 39910
3110099E03Rik 2 115493513 to 115512201 18688 - lincRNA gene RIKEN cDNA 3110099E03 gene
Gm39911 2 115550712 to 115552808 2096 + lncRNA gene predicted gene, 39911
Gm13977 2 115556786 to 115581555 24769 - antisense lncRNA gene predicted gene 13977
Cpgi12058 2 115581226 to 115581874 648 CpG island CpG island 12058
Tssr19462 2 115581651 to 115581665 14 + TSS region transcription start site region 19462
Tssr19463 2 115581667 to 115581743 76 + TSS region transcription start site region 19463
BC052040 2 115581716 to 115778768 197052 + protein coding gene cDNA sequence BC052040
Tssr19464 2 115581765 to 115581792 27 + TSS region transcription start site region 19464
Tssr19465 2 115581795 to 115581822 27 + TSS region transcription start site region 19465
Tssr19466 2 115599185 to 115599200 15 + TSS region transcription start site region 19466
Tbvq2 2 115600000 to 124900000 9300000 QTL trabecular bone volume QTL 2
Mir1951 2 115638725 to 115638813 88 + miRNA gene microRNA 1951
D2Mit335 2 115687653 to 115687832 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 335
D230044P21Rik 2 115695866 to 115701068 5202 unclassified gene RIKEN cDNA D230044P21 gene
Gm31474 2 115727921 to 115743203 15282 - lncRNA gene predicted gene, 31474
5730575I04Rik 2 115768001 to 115770011 2010 unclassified gene RIKEN cDNA 5730575I04 gene
Tssr25710 2 115780540 to 115780548 8 - TSS region transcription start site region 25710
D2Ertd337e 2 115803321 to 115803524 203 DNA segment DNA segment, Chr 2, ERATO Doi 337, expressed
Gm31590 2 115807023 to 115811563 4540 + lncRNA gene predicted gene, 31590
D2Mit391 2 115835947 to 115836070 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 391
Cpgi12059 2 115852563 to 115853008 445 CpG island CpG island 12059
Cpgi12060 2 115854918 to 115855246 328 CpG island CpG island 12060
Cpgi12061 2 115855816 to 115856138 322 CpG island CpG island 12061
Tssr25711 2 115859117 to 115859162 45 - TSS region transcription start site region 25711
Cpgi12062 2 115859718 to 115859876 158 CpG island CpG island 12062
Cpgi12063 2 115860407 to 115860798 391 CpG island CpG island 12063
Meis2 2 115863064 to 116065839 202775 - protein coding gene Meis homeobox 2
Tssr25712 2 115864324 to 115864338 14 - TSS region transcription start site region 25712
Tssr25713 2 115894550 to 115894554 4 - TSS region transcription start site region 25713
D2Mit132 2 115903392 to 115903536 144 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 132
Tssr25714 2 115919784 to 115919787 3 - TSS region transcription start site region 25714
Tssr25715 2 116000184 to 116000193 9 - TSS region transcription start site region 25715
Tssr25716 2 116018260 to 116018265 5 - TSS region transcription start site region 25716
Tssr25717 2 116049109 to 116049129 20 - TSS region transcription start site region 25717
Tssr25718 2 116058788 to 116058799 11 - TSS region transcription start site region 25718
Cpgi12064 2 116060324 to 116060544 220 CpG island CpG island 12064
Cpgi12065 2 116061421 to 116061727 306 CpG island CpG island 12065
Cpgi12066 2 116062167 to 116062461 294 CpG island CpG island 12066
Tssr25719 2 116062514 to 116062562 48 - TSS region transcription start site region 25719
Cpgi12067 2 116063033 to 116064712 1679 CpG island CpG island 12067
Tssr25720 2 116063848 to 116063900 52 - TSS region transcription start site region 25720
Tssr25721 2 116064558 to 116064598 40 - TSS region transcription start site region 25721
Tssr25722 2 116064733 to 116064749 16 - TSS region transcription start site region 25722
Tssr25723 2 116064759 to 116064771 12 - TSS region transcription start site region 25723
Tssr25724 2 116065128 to 116065133 5 - TSS region transcription start site region 25724
Tssr25725 2 116065217 to 116065238 21 - TSS region transcription start site region 25725
Cpgi12068 2 116065532 to 116066002 470 CpG island CpG island 12068
Tssr25726 2 116065645 to 116065656 11 - TSS region transcription start site region 25726
Tssr25727 2 116065673 to 116065689 16 - TSS region transcription start site region 25727
Tssr25728 2 116065691 to 116065705 14 - TSS region transcription start site region 25728
Tssr25729 2 116065718 to 116065735 17 - TSS region transcription start site region 25729
Tssr25730 2 116065785 to 116065796 11 - TSS region transcription start site region 25730
Tssr25731 2 116065798 to 116065853 55 - TSS region transcription start site region 25731
Tssr25732 2 116065944 to 116065965 21 - TSS region transcription start site region 25732
Tssr25733 2 116066034 to 116066063 29 - TSS region transcription start site region 25733
2700033N17Rik 2 116066218 to 116067444 1226 - lincRNA gene RIKEN cDNA 2700033N17 gene
Cpgi12069 2 116066537 to 116067395 858 CpG island CpG island 12069
Tssr25734 2 116067125 to 116067141 16 - TSS region transcription start site region 25734
Tssr25735 2 116067155 to 116067185 30 - TSS region transcription start site region 25735
Tssr19467 2 116067213 to 116067250 37 + TSS region transcription start site region 19467
G630016G05Rik 2 116067225 to 116085911 18686 + lincRNA gene RIKEN cDNA G630016G05 gene
Tssr25736 2 116067355 to 116067366 11 - TSS region transcription start site region 25736
Tssr25737 2 116067391 to 116067409 18 - TSS region transcription start site region 25737
Tssr19468 2 116067933 to 116067975 42 + TSS region transcription start site region 19468