Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:114222916-115895708

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr25704 2 114228676 to 114228681 5 - TSS region transcription start site region 25704
Gm25103 2 114270111 to 114270428 317 + unclassified non-coding RNA gene predicted gene, 25103
Gm29234 2 114272174 to 114273435 1261 - lincRNA gene predicted gene 29234
Actre14 2 114292889 to 118112609 3819720 QTL activity response to ethanol 14
D2Mit102 2 114292889 to 114293051 162 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 102
Lmr28d 2 114292889 to 114293051 162 QTL leishmaniasis resistance 28d
Lmr28c 2 114292889 to 114293051 162 QTL leishmaniasis resistance 28c
Parms1 2 114293051 to 74693773 -39599278 QTL patched associated RMS 1
Tssr19461 2 114294493 to 114294495 2 + TSS region transcription start site region 19461
Edlmmq2 2 114379883 to 114379883 0 QTL extensor digitorum longus muscle mass QTL 2
Gmmq2 2 114379883 to 114379883 0 QTL gastrocnemius muscle mass QTL 2
Gm31146 2 114421421 to 114430323 8902 - lncRNA gene predicted gene, 31146
T2dm3 2 114457594 to 132872237 18414643 QTL type 2 diabetes mellitus 3
D2Mit274 2 114457594 to 114457722 128 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 274
Dph6 2 114516416 to 114654964 138548 - protein coding gene diphthamine biosynthesis 6
Gm13972 2 114654425 to 114697839 43414 + unclassified non-coding RNA gene predicted gene 13972
Cpgi12057 2 114654443 to 114655077 634 CpG island CpG island 12057
Tssr25705 2 114654861 to 114654915 54 - TSS region transcription start site region 25705
Tssr25706 2 114654922 to 114654939 17 - TSS region transcription start site region 25706
Tssr25707 2 114654943 to 114654969 26 - TSS region transcription start site region 25707
D2Mit275 2 114692249 to 114692432 183 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 275
Gm13975 2 114708112 to 114708893 781 + pseudogene predicted gene 13975
Gm13974 2 114854093 to 115043972 189879 + lincRNA gene predicted gene 13974
Gm28494 2 114897916 to 115220708 322792 - lincRNA gene predicted gene 28494
Gm28492 2 114938570 to 114939588 1018 + sense intronic lncRNA gene predicted gene 28492
Gm13973 2 115036419 to 115037312 893 - pseudogene predicted gene 13973
D2Mit101 2 115079495 to 115079684 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 101
Dntcs2 2 115079684 to 40995481 -74084203 QTL dental caries susceptibility 2
Gm28493 2 115135550 to 115137786 2236 + lincRNA gene predicted gene 28493
4930528P14Rik 2 115329266 to 115344280 15014 - lincRNA gene RIKEN cDNA 4930528P14 gene
Gm18967 2 115333183 to 115333743 560 + pseudogene predicted gene, 18967
4930546E12Rik 2 115333947 to 115334537 590 unclassified gene RIKEN cDNA 4930546E12 gene
Tssr25708 2 115344276 to 115344283 7 - TSS region transcription start site region 25708
Tssr25709 2 115344287 to 115344297 10 - TSS region transcription start site region 25709
Gm13976 2 115344385 to 115346968 2583 + lincRNA gene predicted gene 13976
Gm31351 2 115371171 to 115379216 8045 - lncRNA gene predicted gene, 31351
Gm31413 2 115380093 to 115383357 3264 - lncRNA gene predicted gene, 31413
Gm39910 2 115402078 to 115410267 8189 - lncRNA gene predicted gene, 39910
3110099E03Rik 2 115493513 to 115512201 18688 - lincRNA gene RIKEN cDNA 3110099E03 gene
Gm39911 2 115550712 to 115552808 2096 + lncRNA gene predicted gene, 39911
Gm13977 2 115556786 to 115581555 24769 - antisense lncRNA gene predicted gene 13977
Cpgi12058 2 115581226 to 115581874 648 CpG island CpG island 12058
Tssr19462 2 115581651 to 115581665 14 + TSS region transcription start site region 19462
Tssr19463 2 115581667 to 115581743 76 + TSS region transcription start site region 19463
BC052040 2 115581716 to 115778768 197052 + protein coding gene cDNA sequence BC052040
Tssr19464 2 115581765 to 115581792 27 + TSS region transcription start site region 19464
Tssr19465 2 115581795 to 115581822 27 + TSS region transcription start site region 19465
Tssr19466 2 115599185 to 115599200 15 + TSS region transcription start site region 19466
Tbvq2 2 115600000 to 124900000 9300000 QTL trabecular bone volume QTL 2
Mir1951 2 115638725 to 115638813 88 + miRNA gene microRNA 1951
D2Mit335 2 115687653 to 115687832 179 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 335
D230044P21Rik 2 115695866 to 115701068 5202 unclassified gene RIKEN cDNA D230044P21 gene
Gm31474 2 115727921 to 115743203 15282 - lncRNA gene predicted gene, 31474
5730575I04Rik 2 115768001 to 115770011 2010 unclassified gene RIKEN cDNA 5730575I04 gene
Tssr25710 2 115780540 to 115780548 8 - TSS region transcription start site region 25710
D2Ertd337e 2 115803321 to 115803524 203 DNA segment DNA segment, Chr 2, ERATO Doi 337, expressed
Gm31590 2 115807023 to 115811563 4540 + lncRNA gene predicted gene, 31590
D2Mit391 2 115835947 to 115836070 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 391
Cpgi12059 2 115852563 to 115853008 445 CpG island CpG island 12059
Cpgi12060 2 115854918 to 115855246 328 CpG island CpG island 12060
Cpgi12061 2 115855816 to 115856138 322 CpG island CpG island 12061
Tssr25711 2 115859117 to 115859162 45 - TSS region transcription start site region 25711
Cpgi12062 2 115859718 to 115859876 158 CpG island CpG island 12062
Cpgi12063 2 115860407 to 115860798 391 CpG island CpG island 12063
Meis2 2 115863064 to 116065839 202775 - protein coding gene Meis homeobox 2
Tssr25712 2 115864324 to 115864338 14 - TSS region transcription start site region 25712
Tssr25713 2 115894550 to 115894554 4 - TSS region transcription start site region 25713