Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:8753196-9283215

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281 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx5a 19 8741424 to 8755642 14218 + protein coding gene syntaxin 5A
1700023D09Rik 19 8754789 to 8756969 2180 - lncRNA gene RIKEN cDNA 1700023D09 gene
Cpgi10571 19 8756683 to 8757585 902 CpG island CpG island 10571
Tssr154814 19 8756723 to 8756744 21 + TSS region transcription start site region 154814
Tssr158049 19 8756898 to 8756913 15 - TSS region transcription start site region 158049
Tssr154815 19 8757079 to 8757093 14 + TSS region transcription start site region 154815
Tssr154816 19 8757099 to 8757126 27 + TSS region transcription start site region 154816
Nxf1 19 8757103 to 8770910 13807 + protein coding gene nuclear RNA export factor 1
Tssr154817 19 8757139 to 8757155 16 + TSS region transcription start site region 154817
Tssr154818 19 8757414 to 8757447 33 + TSS region transcription start site region 154818
Tssr154819 19 8765030 to 8765034 4 + TSS region transcription start site region 154819
Tssr154820 19 8766714 to 8766727 13 + TSS region transcription start site region 154820
Cpgi10572 19 8770849 to 8771449 600 CpG island CpG island 10572
Tssr154821 19 8770983 to 8771019 36 + TSS region transcription start site region 154821
Tmem223 19 8770996 to 8772475 1479 + protein coding gene transmembrane protein 223
Tssr154822 19 8771037 to 8771055 18 + TSS region transcription start site region 154822
Tssr154823 19 8771058 to 8771069 11 + TSS region transcription start site region 154823
Tmem179b 19 8772522 to 8774467 1945 - protein coding gene transmembrane protein 179B
Tssr158050 19 8773567 to 8773595 28 - TSS region transcription start site region 158050
Cpgi10573 19 8774233 to 8775322 1089 CpG island CpG island 10573
Taf6l 19 8774354 to 8786417 12063 - protein coding gene TATA-box binding protein associated factor 6 like
Tssr158051 19 8774431 to 8774470 39 - TSS region transcription start site region 158051
Tssr154824 19 8774484 to 8774496 12 + TSS region transcription start site region 154824
Gm2518 19 8774485 to 8776962 2477 + pseudogene predicted gene 2518
Cpgi10574 19 8785989 to 8786527 538 CpG island CpG island 10574
Tssr158052 19 8786245 to 8786270 25 - TSS region transcription start site region 158052
Tssr158053 19 8786272 to 8786297 25 - TSS region transcription start site region 158053
Tssr158054 19 8786408 to 8786422 14 - TSS region transcription start site region 158054
Tssr158055 19 8786431 to 8786440 9 - TSS region transcription start site region 158055
Polr2g 19 8793129 to 8798557 5428 - protein coding gene polymerase (RNA) II (DNA directed) polypeptide G
Cpgi10575 19 8798170 to 8798657 487 CpG island CpG island 10575
Tssr158056 19 8798385 to 8798395 10 - TSS region transcription start site region 158056
Tssr158057 19 8798404 to 8798418 14 - TSS region transcription start site region 158057
Tssr158058 19 8798421 to 8798432 11 - TSS region transcription start site region 158058
Tssr158059 19 8798465 to 8798470 5 - TSS region transcription start site region 158059
Tssr158060 19 8798495 to 8798565 70 - TSS region transcription start site region 158060
Tssr158061 19 8798571 to 8798593 22 - TSS region transcription start site region 158061
Cpgi10576 19 8802209 to 8802764 555 CpG island CpG island 10576
Tssr154825 19 8802486 to 8802521 35 + TSS region transcription start site region 154825
Zbtb3 19 8802530 to 8804854 2324 + protein coding gene zinc finger and BTB domain containing 3
Tssr154826 19 8802539 to 8802558 19 + TSS region transcription start site region 154826
Tssr154827 19 8802779 to 8802791 12 + TSS region transcription start site region 154827
Tssr154828 19 8802841 to 8802850 9 + TSS region transcription start site region 154828
Ttc9c 19 8809075 to 8819333 10258 - protein coding gene tetratricopeptide repeat domain 9C
Tssr158062 19 8809371 to 8809389 18 - TSS region transcription start site region 158062
Tssr158063 19 8818671 to 8818712 41 - TSS region transcription start site region 158063
Tssr158064 19 8818946 to 8819008 62 - TSS region transcription start site region 158064
Tssr158065 19 8819184 to 8819191 7 - TSS region transcription start site region 158065
Cpgi10577 19 8819217 to 8821069 1852 CpG island CpG island 10577
Tssr158066 19 8819236 to 8819251 15 - TSS region transcription start site region 158066
Tssr158067 19 8819278 to 8819301 23 - TSS region transcription start site region 158067
Tssr158068 19 8819314 to 8819350 36 - TSS region transcription start site region 158068
Hnrnpul2 19 8819401 to 8834142 14741 + protein coding gene heterogeneous nuclear ribonucleoprotein U-like 2
Tssr154829 19 8819560 to 8819574 14 + TSS region transcription start site region 154829
Tssr154830 19 8819582 to 8819608 26 + TSS region transcription start site region 154830
Tssr158069 19 8819757 to 8819790 33 - TSS region transcription start site region 158069
Tssr154831 19 8819966 to 8820034 68 + TSS region transcription start site region 154831
Tssr154832 19 8820049 to 8820060 11 + TSS region transcription start site region 154832
Tssr154833 19 8820065 to 8820076 11 + TSS region transcription start site region 154833
Tssr154834 19 8820128 to 8820139 11 + TSS region transcription start site region 154834
Tssr154835 19 8820216 to 8820249 33 + TSS region transcription start site region 154835
Tssr154836 19 8820253 to 8820314 61 + TSS region transcription start site region 154836
Tssr154837 19 8820670 to 8820681 11 + TSS region transcription start site region 154837
Tssr154838 19 8820693 to 8820704 11 + TSS region transcription start site region 154838
Tssr158070 19 8821310 to 8821331 21 - TSS region transcription start site region 158070
Tssr154839 19 8822855 to 8822870 15 + TSS region transcription start site region 154839
Tssr154840 19 8826702 to 8826724 22 + TSS region transcription start site region 154840
Tssr5434 19 8831224 to 8831227 3 + TSS region transcription start site region 5434
Tssr154841 19 8831585 to 8831597 12 + TSS region transcription start site region 154841
Tssr154842 19 8831695 to 8831700 5 + TSS region transcription start site region 154842
Gng3 19 8836929 to 8839246 2317 - protein coding gene guanine nucleotide binding protein (G protein), gamma 3
Cpgi10578 19 8837260 to 8837846 586 CpG island CpG island 10578
Tssr154843 19 8837445 to 8837558 113 + TSS region transcription start site region 154843
Bscl2 19 8837467 to 8848683 11216 + protein coding gene Berardinelli-Seip congenital lipodystrophy 2 (seipin)
Tssr154844 19 8837561 to 8837597 36 + TSS region transcription start site region 154844
Tssr154845 19 8837599 to 8837608 9 + TSS region transcription start site region 154845
Tssr154846 19 8837676 to 8837721 45 + TSS region transcription start site region 154846
Tssr158071 19 8838101 to 8838142 41 - TSS region transcription start site region 158071
Tssr158072 19 8838635 to 8838649 14 - TSS region transcription start site region 158072
Tssr154847 19 8838771 to 8838778 7 + TSS region transcription start site region 154847
Tssr5435 19 8839016 to 8839054 38 - TSS region transcription start site region 5435
Tssr5436 19 8839128 to 8839143 15 - TSS region transcription start site region 5436
Tssr158073 19 8839150 to 8839161 11 - TSS region transcription start site region 158073
Tssr158074 19 8839181 to 8839265 84 - TSS region transcription start site region 158074
Tssr154848 19 8839275 to 8839286 11 + TSS region transcription start site region 154848
Tssr5437 19 8839277 to 8839294 17 - TSS region transcription start site region 5437
Tssr154849 19 8839298 to 8839346 48 + TSS region transcription start site region 154849
Tssr5438 19 8839328 to 8839334 6 - TSS region transcription start site region 5438
Tssr154850 19 8839352 to 8839375 23 + TSS region transcription start site region 154850
Tssr154851 19 8839386 to 8839400 14 + TSS region transcription start site region 154851
Tssr5439 19 8839453 to 8839458 5 - TSS region transcription start site region 5439
Tssr154852 19 8839458 to 8839470 12 + TSS region transcription start site region 154852
Tssr154853 19 8839471 to 8839493 22 + TSS region transcription start site region 154853
Tssr154854 19 8839508 to 8839558 50 + TSS region transcription start site region 154854
Tssr154855 19 8839559 to 8839580 21 + TSS region transcription start site region 154855
Tssr154856 19 8839586 to 8839597 11 + TSS region transcription start site region 154856
Cpgi10579 19 8840470 to 8840759 289 CpG island CpG island 10579
Tssr154857 19 8840519 to 8840549 30 + TSS region transcription start site region 154857
Tssr154858 19 8840565 to 8840577 12 + TSS region transcription start site region 154858
Tssr154859 19 8841180 to 8841197 17 + TSS region transcription start site region 154859
Tssr154860 19 8841205 to 8841239 34 + TSS region transcription start site region 154860
Tssr154861 19 8842985 to 8843035 50 + TSS region transcription start site region 154861
Lrrn4cl 19 8850785 to 8853909 3124 + protein coding gene LRRN4 C-terminal like
Tssr154862 19 8850939 to 8850954 15 + TSS region transcription start site region 154862
D19Mit125 19 8853007 to 8853116 109 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 125
Cpgi10580 19 8871385 to 8872126 741 CpG island CpG island 10580
Tssr154863 19 8871512 to 8871559 47 + TSS region transcription start site region 154863
Ubxn1 19 8871559 to 8875663 4104 + protein coding gene UBX domain protein 1
Tssr154864 19 8871560 to 8871598 38 + TSS region transcription start site region 154864
Tssr154865 19 8871605 to 8871616 11 + TSS region transcription start site region 154865
Tssr154866 19 8871617 to 8871628 11 + TSS region transcription start site region 154866
Tssr154867 19 8871636 to 8871686 50 + TSS region transcription start site region 154867
Tssr154868 19 8873559 to 8873584 25 + TSS region transcription start site region 154868
Uqcc3 19 8880016 to 8880933 917 - protein coding gene ubiquinol-cytochrome c reductase complex assembly factor 3
Cpgi10581 19 8880189 to 8880957 768 CpG island CpG island 10581
Tssr158075 19 8880832 to 8880854 22 - TSS region transcription start site region 158075
Tssr158076 19 8880883 to 8880928 45 - TSS region transcription start site region 158076
Tssr154869 19 8883848 to 8883861 13 + TSS region transcription start site region 154869
Tssr154870 19 8883865 to 8883909 44 + TSS region transcription start site region 154870
Lbhd1 19 8883878 to 8890759 6881 + protein coding gene LBH domain containing 1
Tssr154871 19 8883910 to 8883928 18 + TSS region transcription start site region 154871
Gm49403 19 8883930 to 8887258 3328 + protein coding gene predicted gene, 49403
5730408K05Rik 19 8888387 to 8888770 383 - lncRNA gene RIKEN cDNA 5730408K05 gene
Cpgi10582 19 8888388 to 8889343 955 CpG island CpG island 10582
Snora57 19 8888538 to 8888685 147 - snoRNA gene small nucleolar RNA, H/ACA box 57
Mir5136 19 8888699 to 8888774 75 - miRNA gene microRNA 5136
Tssr158077 19 8888769 to 8888770 1 - TSS region transcription start site region 158077
Tssr154872 19 8888880 to 8888925 45 + TSS region transcription start site region 154872
1810009A15Rik 19 8888883 to 8890759 1876 + protein coding gene RIKEN cDNA 1810009A15 gene
Gm49416 19 8888926 to 8895227 6301 + protein coding gene predicted gene, 49416
Tssr154873 19 8888946 to 8888953 7 + TSS region transcription start site region 154873
Cpgi10583 19 8892708 to 8893417 709 CpG island CpG island 10583
Ints5 19 8892987 to 8897890 4903 + protein coding gene integrator complex subunit 5
Tssr154874 19 8892998 to 8893052 54 + TSS region transcription start site region 154874
Cpgi10584 19 8897649 to 8898630 981 CpG island CpG island 10584
Ganab 19 8898090 to 8916663 18573 + protein coding gene alpha glucosidase 2 alpha neutral subunit
Tssr154875 19 8898095 to 8898122 27 + TSS region transcription start site region 154875
Tssr154876 19 8904986 to 8905015 29 + TSS region transcription start site region 154876
Tssr154877 19 8915756 to 8915783 27 + TSS region transcription start site region 154877
Gm36629 19 8918937 to 8921842 2905 - lncRNA gene predicted gene, 36629
Cpgi10585 19 8920085 to 8920941 856 CpG island CpG island 10585
Tssr154878 19 8920358 to 8920426 68 + TSS region transcription start site region 154878
B3gat3 19 8920393 to 8927236 6843 + protein coding gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)
Tssr154879 19 8920432 to 8920446 14 + TSS region transcription start site region 154879
Tssr154880 19 8920461 to 8920473 12 + TSS region transcription start site region 154880
Tssr154881 19 8920496 to 8920575 79 + TSS region transcription start site region 154881
Tssr158078 19 8921843 to 8921851 8 - TSS region transcription start site region 158078
Tssr154882 19 8922057 to 8922074 17 + TSS region transcription start site region 154882
Tssr154883 19 8922124 to 8922136 12 + TSS region transcription start site region 154883
Tssr154884 19 8926923 to 8926926 3 + TSS region transcription start site region 154884
Rom1 19 8927382 to 8929356 1974 - protein coding gene rod outer segment membrane protein 1
Cpgi10586 19 8928924 to 8930455 1531 CpG island CpG island 10586
Tssr158079 19 8929181 to 8929204 23 - TSS region transcription start site region 158079
Tssr158080 19 8929323 to 8929337 14 - TSS region transcription start site region 158080
Tssr154885 19 8929413 to 8929448 35 + TSS region transcription start site region 154885
Tssr154886 19 8929450 to 8929477 27 + TSS region transcription start site region 154886
Tssr154887 19 8929554 to 8929581 27 + TSS region transcription start site region 154887
Tssr154888 19 8929628 to 8929694 66 + TSS region transcription start site region 154888
Eml3 19 8929694 to 8941582 11888 + protein coding gene echinoderm microtubule associated protein like 3
Tssr154889 19 8929841 to 8929866 25 + TSS region transcription start site region 154889
Tssr154890 19 8932449 to 8932487 38 + TSS region transcription start site region 154890
Gm10353 19 8936975 to 8940864 3889 - antisense lncRNA gene predicted gene 10353
Tssr154891 19 8939556 to 8939559 3 + TSS region transcription start site region 154891
Cpgi10587 19 8941592 to 8942754 1162 CpG island CpG island 10587
Tssr154892 19 8941845 to 8941852 7 + TSS region transcription start site region 154892
Tssr154893 19 8941865 to 8942050 185 + TSS region transcription start site region 154893
Mta2 19 8941920 to 8952300 10380 + protein coding gene metastasis-associated gene family, member 2
Tssr154894 19 8942161 to 8942172 11 + TSS region transcription start site region 154894
Tssr154895 19 8942239 to 8942250 11 + TSS region transcription start site region 154895
Tssr158081 19 8942366 to 8942411 45 - TSS region transcription start site region 158081
Tssr154896 19 8942485 to 8942514 29 + TSS region transcription start site region 154896
Tssr154897 19 8942521 to 8942542 21 + TSS region transcription start site region 154897
Tssr154898 19 8943117 to 8943120 3 + TSS region transcription start site region 154898
Tssr154899 19 8943559 to 8943564 5 + TSS region transcription start site region 154899
Tssr154900 19 8952070 to 8952085 15 + TSS region transcription start site region 154900
Cpgi10588 19 8953460 to 8954102 642 CpG island CpG island 10588
Tssr154901 19 8953826 to 8953856 30 + TSS region transcription start site region 154901
Tut1 19 8953850 to 8966207 12357 + protein coding gene terminal uridylyl transferase 1, U6 snRNA-specific
Tssr154902 19 8953861 to 8953884 23 + TSS region transcription start site region 154902
Tssr154903 19 8953886 to 8953938 52 + TSS region transcription start site region 154903
Tssr154904 19 8953977 to 8953991 14 + TSS region transcription start site region 154904
Cpgi10589 19 8966613 to 8967437 824 CpG island CpG island 10589
Tssr154905 19 8966721 to 8966735 14 + TSS region transcription start site region 154905
Tssr154906 19 8966999 to 8967019 20 + TSS region transcription start site region 154906
Tssr154907 19 8967031 to 8967050 19 + TSS region transcription start site region 154907
Eef1g 19 8967041 to 8978180 11139 + protein coding gene eukaryotic translation elongation factor 1 gamma
Tssr154908 19 8967064 to 8967077 13 + TSS region transcription start site region 154908
Tssr154909 19 8967079 to 8967102 23 + TSS region transcription start site region 154909
Tssr154910 19 8967109 to 8967171 62 + TSS region transcription start site region 154910
Tssr154911 19 8967175 to 8967208 33 + TSS region transcription start site region 154911
Tssr154912 19 8970560 to 8970565 5 + TSS region transcription start site region 154912
Tssr158082 19 8984425 to 8984437 12 - TSS region transcription start site region 158082
Tssr154913 19 8984836 to 8984882 46 + TSS region transcription start site region 154913
Cpgi10590 19 8988873 to 8990000 1127 CpG island CpG island 10590
Tssr154914 19 8989021 to 8989064 43 + TSS region transcription start site region 154914
Tssr154915 19 8989277 to 8989295 18 + TSS region transcription start site region 154915
Ahnak 19 8989284 to 9076919 87635 + protein coding gene AHNAK nucleoprotein (desmoyokin)
Tssr154916 19 8989327 to 8989338 11 + TSS region transcription start site region 154916
Tssr154917 19 8990238 to 8990261 23 + TSS region transcription start site region 154917
Tssr154918 19 8990268 to 8990313 45 + TSS region transcription start site region 154918