Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:7353085-7613123

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spindoc 19 7356464 to 7383026 26562 - protein coding gene spindlin interactor and repressor of chromatin binding
Gm46647 19 7370339 to 7372580 2241 - lncRNA gene predicted gene, 46647
Cpgi10554 19 7382173 to 7383342 1169 CpG island CpG island 10554
Tssr157969 19 7382434 to 7382449 15 - TSS region transcription start site region 157969
Tssr157970 19 7382944 to 7382976 32 - TSS region transcription start site region 157970
Tssr157971 19 7382985 to 7383000 15 - TSS region transcription start site region 157971
1700105P06Rik 19 7383003 to 7383561 558 + antisense lncRNA gene RIKEN cDNA 1700105P06 gene
Tssr157972 19 7383020 to 7383025 5 - TSS region transcription start site region 157972
Tssr157973 19 7383029 to 7383063 34 - TSS region transcription start site region 157973
Tssr154750 19 7383123 to 7383135 12 + TSS region transcription start site region 154750
Tssr154751 19 7383143 to 7383160 17 + TSS region transcription start site region 154751
Rab11b-ps2 19 7398421 to 7399077 656 - pseudogene RAB11B, member RAS oncogene family, pseudogene 2
Cpgi10555 19 7398829 to 7399055 226 CpG island CpG island 10555
Gm18842 19 7402834 to 7403431 597 - pseudogene predicted gene, 18842
Cpgi10556 19 7416584 to 7418602 2018 CpG island CpG island 10556
Tssr154752 19 7417127 to 7417229 102 + TSS region transcription start site region 154752
Tssr154753 19 7417586 to 7417650 64 + TSS region transcription start site region 154753
2700081O15Rik 19 7417625 to 7425904 8279 + protein coding gene RIKEN cDNA 2700081O15 gene
Tssr157974 19 7418306 to 7418309 3 - TSS region transcription start site region 157974
Cpgi10557 19 7421310 to 7421474 164 CpG island CpG island 10557
Cpgi10558 19 7421952 to 7423890 1938 CpG island CpG island 10558
Mir6991 19 7422573 to 7422642 69 + miRNA gene microRNA 6991
Rtn3 19 7425901 to 7483289 57388 - protein coding gene reticulon 3
Tssr157975 19 7426519 to 7426559 40 - TSS region transcription start site region 157975
Tssr157976 19 7426822 to 7426835 13 - TSS region transcription start site region 157976
Tssr157977 19 7427141 to 7427156 15 - TSS region transcription start site region 157977
Tssr157978 19 7427673 to 7427700 27 - TSS region transcription start site region 157978
Tssr157979 19 7431018 to 7431037 19 - TSS region transcription start site region 157979
Tssr157980 19 7432008 to 7432052 44 - TSS region transcription start site region 157980
Tssr157981 19 7432494 to 7432512 18 - TSS region transcription start site region 157981
Tssr157982 19 7439658 to 7439668 10 - TSS region transcription start site region 157982
Tssr157983 19 7441560 to 7441579 19 - TSS region transcription start site region 157983
Tssr157984 19 7441580 to 7441616 36 - TSS region transcription start site region 157984
Tssr157985 19 7469605 to 7469607 2 - TSS region transcription start site region 157985
A830080L01Rik 19 7472708 to 7476412 3704 unclassified gene RIKEN cDNA A830080L01 gene
Tssr157986 19 7482336 to 7482341 5 - TSS region transcription start site region 157986
Cpgi10559 19 7482492 to 7483493 1001 CpG island CpG island 10559
Tssr5428 19 7482981 to 7482984 3 - TSS region transcription start site region 5428
Tssr5429 19 7483059 to 7483068 9 - TSS region transcription start site region 5429
Tssr157987 19 7483085 to 7483123 38 - TSS region transcription start site region 157987
Tssr157988 19 7483137 to 7483148 11 - TSS region transcription start site region 157988
Tssr5430 19 7483152 to 7483164 12 - TSS region transcription start site region 5430
Tssr157989 19 7483199 to 7483210 11 - TSS region transcription start site region 157989
Tssr157990 19 7483212 to 7483229 17 - TSS region transcription start site region 157990
Tssr157991 19 7483241 to 7483279 38 - TSS region transcription start site region 157991
Tssr5431 19 7483288 to 7483290 2 - TSS region transcription start site region 5431
Cpgi10560 19 7493882 to 7495075 1193 CpG island CpG island 10560
Tssr154754 19 7494020 to 7494031 11 + TSS region transcription start site region 154754
Tssr154755 19 7494033 to 7494068 35 + TSS region transcription start site region 154755
Atl3 19 7494040 to 7538608 44568 + protein coding gene atlastin GTPase 3
Tssr154756 19 7494245 to 7494264 19 + TSS region transcription start site region 154756
Tssr154757 19 7494427 to 7494462 35 + TSS region transcription start site region 154757
Tssr154758 19 7494463 to 7494474 11 + TSS region transcription start site region 154758
Tssr154759 19 7494503 to 7494506 3 + TSS region transcription start site region 154759
Tssr154760 19 7494522 to 7494598 76 + TSS region transcription start site region 154760
Tssr154761 19 7536859 to 7536870 11 + TSS region transcription start site region 154761
Tssr154762 19 7536872 to 7536888 16 + TSS region transcription start site region 154762
Tssr154763 19 7536893 to 7536912 19 + TSS region transcription start site region 154763
Tssr154764 19 7537760 to 7537776 16 + TSS region transcription start site region 154764
Tssr154765 19 7539131 to 7539133 2 + TSS region transcription start site region 154765
Tssr154766 19 7557452 to 7557465 13 + TSS region transcription start site region 154766
Plaat3 19 7557459 to 7588545 31086 + protein coding gene phospholipase A and acyltransferase 3
Tssr154767 19 7557473 to 7557497 24 + TSS region transcription start site region 154767
Tssr154768 19 7557500 to 7557513 13 + TSS region transcription start site region 154768
Cpgi10561 19 7557555 to 7557788 233 CpG island CpG island 10561
Tssr154769 19 7557642 to 7557689 47 + TSS region transcription start site region 154769
Tssr154770 19 7559642 to 7559665 23 + TSS region transcription start site region 154770
Tssr154771 19 7561728 to 7561746 18 + TSS region transcription start site region 154771
Tssr154772 19 7579132 to 7579146 14 + TSS region transcription start site region 154772
Tssr154773 19 7581335 to 7581347 12 + TSS region transcription start site region 154773
Tssr157992 19 7583230 to 7583251 21 - TSS region transcription start site region 157992
Tssr157993 19 7583265 to 7583273 8 - TSS region transcription start site region 157993
Tssr157994 19 7583332 to 7583336 4 - TSS region transcription start site region 157994
D19Mit78 19 7591408 to 7591541 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 78
Tssr154774 19 7591806 to 7591810 4 + TSS region transcription start site region 154774
Lgals12 19 7596660 to 7607193 10533 - protein coding gene lectin, galactose binding, soluble 12
Tssr157995 19 7597969 to 7597987 18 - TSS region transcription start site region 157995
Tssr157996 19 7606954 to 7606965 11 - TSS region transcription start site region 157996
Tssr157997 19 7607140 to 7607203 63 - TSS region transcription start site region 157997
Tssr157998 19 7610465 to 7610483 18 - TSS region transcription start site region 157998
Cpgi10562 19 7612125 to 7612837 712 CpG island CpG island 10562
Tssr154775 19 7612496 to 7612507 11 + TSS region transcription start site region 154775
Tssr154776 19 7612519 to 7612618 99 + TSS region transcription start site region 154776
Plaat5 19 7612569 to 7639238 26669 + protein coding gene phospholipase A and acyltransferase 5