Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:6959190-7120796

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plcb3 19 6953714 to 6969759 16045 - protein coding gene phospholipase C, beta 3
Cpgi10536 19 6969048 to 6970529 1481 CpG island CpG island 10536
Tssr157906 19 6969732 to 6969743 11 - TSS region transcription start site region 157906
Tssr157907 19 6969746 to 6969808 62 - TSS region transcription start site region 157907
Cpgi10537 19 6974222 to 6975749 1527 CpG island CpG island 10537
Tssr154704 19 6974613 to 6974682 69 + TSS region transcription start site region 154704
Tssr154705 19 6974951 to 6975003 52 + TSS region transcription start site region 154705
Tssr154706 19 6975048 to 6975071 23 + TSS region transcription start site region 154706
Ppp1r14b 19 6975048 to 6977324 2276 + protein coding gene protein phosphatase 1, regulatory inhibitor subunit 14B
Tssr154707 19 6975076 to 6975104 28 + TSS region transcription start site region 154707
Tssr154708 19 6975111 to 6975118 7 + TSS region transcription start site region 154708
Tssr154709 19 6975122 to 6975125 3 + TSS region transcription start site region 154709
Tssr154710 19 6975138 to 6975158 20 + TSS region transcription start site region 154710
Tssr154711 19 6975212 to 6975231 19 + TSS region transcription start site region 154711
Tssr154712 19 6976373 to 6976384 11 + TSS region transcription start site region 154712
Tssr154713 19 6976415 to 6976453 38 + TSS region transcription start site region 154713
Tssr154714 19 6976456 to 6976466 10 + TSS region transcription start site region 154714
Tssr154715 19 6976474 to 6976497 23 + TSS region transcription start site region 154715
Tssr154716 19 6976500 to 6976524 24 + TSS region transcription start site region 154716
Fkbp2 19 6977741 to 6980461 2720 - protein coding gene FK506 binding protein 2
Tssr157908 19 6979135 to 6979159 24 - TSS region transcription start site region 157908
Cpgi10538 19 6979393 to 6980878 1485 CpG island CpG island 10538
Tssr157909 19 6979874 to 6979896 22 - TSS region transcription start site region 157909
Tssr157910 19 6980420 to 6980481 61 - TSS region transcription start site region 157910
Gm41803 19 6980528 to 6984168 3640 + lncRNA gene predicted gene, 41803
Tssr5426 19 6980582 to 6980614 32 + TSS region transcription start site region 5426
Tssr154717 19 6980621 to 6980638 17 + TSS region transcription start site region 154717
Vegfb 19 6982473 to 6987651 5178 - protein coding gene vascular endothelial growth factor B
Tssr157911 19 6985439 to 6985466 27 - TSS region transcription start site region 157911
Tssr154718 19 6986018 to 6986067 49 + TSS region transcription start site region 154718
Cpgi10539 19 6987030 to 6988290 1260 CpG island CpG island 10539
Tssr157912 19 6987413 to 6987446 33 - TSS region transcription start site region 157912
Tssr157913 19 6987460 to 6987517 57 - TSS region transcription start site region 157913
Tssr157914 19 6987521 to 6987534 13 - TSS region transcription start site region 157914
Tssr157915 19 6987591 to 6987618 27 - TSS region transcription start site region 157915
Tssr157916 19 6987621 to 6987764 143 - TSS region transcription start site region 157916
Dnajc4 19 6987911 to 6992503 4592 - protein coding gene DnaJ heat shock protein family (Hsp40) member C4
Cpgi10540 19 6992139 to 6992888 749 CpG island CpG island 10540
Tssr157917 19 6992478 to 6992524 46 - TSS region transcription start site region 157917
Tssr157918 19 6992570 to 6992594 24 - TSS region transcription start site region 157918
Gm35838 19 6992674 to 6993046 372 + lncRNA gene predicted gene, 35838
Nudt22 19 6993019 to 6996115 3096 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 22
Cpgi10541 19 6996015 to 6996366 351 CpG island CpG island 10541
Tssr157919 19 6996025 to 6996096 71 - TSS region transcription start site region 157919
Tssr154719 19 6996114 to 6996136 22 + TSS region transcription start site region 154719
Trpt1 19 6996131 to 6999044 2913 + protein coding gene tRNA phosphotransferase 1
Tssr154720 19 6996143 to 6996207 64 + TSS region transcription start site region 154720
Tssr154721 19 6996212 to 6996232 20 + TSS region transcription start site region 154721
Fermt3 19 6998958 to 7019469 20511 - protein coding gene fermitin family member 3
Tssr157920 19 6999430 to 6999441 11 - TSS region transcription start site region 157920
Tssr157921 19 7002268 to 7002270 2 - TSS region transcription start site region 157921
Tssr157922 19 7014150 to 7014213 63 - TSS region transcription start site region 157922
Tssr154722 19 7014351 to 7014399 48 + TSS region transcription start site region 154722
Tssr154723 19 7017910 to 7017930 20 + TSS region transcription start site region 154723
Tssr154724 19 7017961 to 7017972 11 + TSS region transcription start site region 154724
Tssr154725 19 7018309 to 7018333 24 + TSS region transcription start site region 154725
Tssr154726 19 7018692 to 7018731 39 + TSS region transcription start site region 154726
Tssr154727 19 7018752 to 7018769 17 + TSS region transcription start site region 154727
Tssr154728 19 7018784 to 7018797 13 + TSS region transcription start site region 154728
Tssr154729 19 7018815 to 7018827 12 + TSS region transcription start site region 154729
Tssr157923 19 7019328 to 7019339 11 - TSS region transcription start site region 157923
Tssr157924 19 7019340 to 7019415 75 - TSS region transcription start site region 157924
Tssr157925 19 7019423 to 7019463 40 - TSS region transcription start site region 157925
Stip1 19 7020696 to 7040026 19330 - protein coding gene stress-induced phosphoprotein 1
Tssr157926 19 7020938 to 7020961 23 - TSS region transcription start site region 157926
Tssr157927 19 7021093 to 7021104 11 - TSS region transcription start site region 157927
Tssr154730 19 7025638 to 7025652 14 + TSS region transcription start site region 154730
Tssr157928 19 7028979 to 7028991 12 - TSS region transcription start site region 157928
Tssr157929 19 7032548 to 7032577 29 - TSS region transcription start site region 157929
Cpgi10542 19 7039190 to 7040796 1606 CpG island CpG island 10542
Tssr154731 19 7039526 to 7039538 12 + TSS region transcription start site region 154731
Tssr154732 19 7039592 to 7039608 16 + TSS region transcription start site region 154732
Tssr157930 19 7039902 to 7039925 23 - TSS region transcription start site region 157930
Tssr157931 19 7039931 to 7039980 49 - TSS region transcription start site region 157931
Tssr157932 19 7039987 to 7039994 7 - TSS region transcription start site region 157932
Cpgi10543 19 7056360 to 7057572 1212 CpG island CpG island 10543
Tssr154733 19 7056731 to 7056773 42 + TSS region transcription start site region 154733
Macrod1 19 7056768 to 7198061 141293 + protein coding gene MACRO domain containing 1
Tssr154734 19 7056781 to 7056809 28 + TSS region transcription start site region 154734
Tssr154735 19 7056867 to 7056933 66 + TSS region transcription start site region 154735
Tssr154736 19 7056949 to 7056950 1 + TSS region transcription start site region 154736
Cpgi10544 19 7057633 to 7057934 301 CpG island CpG island 10544
5730409K12Rik 19 7084710 to 7090741 6031 + unclassified gene RIKEN cDNA 5730409K12 gene
Tssr157933 19 7089603 to 7089606 3 - TSS region transcription start site region 157933
Tssr157934 19 7090749 to 7090752 3 - TSS region transcription start site region 157934
Flrt1 19 7092014 to 7105729 13715 - protein coding gene fibronectin leucine rich transmembrane protein 1
Tssr157935 19 7094861 to 7094866 5 - TSS region transcription start site region 157935
D19Mit94 19 7120593 to 7120693 100 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 94