Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5894347-6084360

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10486 19 5893539 to 5894379 840 CpG island CpG island 10486
Dpf2 19 5896516 to 5912871 16355 - protein coding gene D4, zinc and double PHD fingers family 2
Tssr157792 19 5898204 to 5898216 12 - TSS region transcription start site region 157792
Tssr157793 19 5902664 to 5902694 30 - TSS region transcription start site region 157793
Tssr157794 19 5905489 to 5905525 36 - TSS region transcription start site region 157794
Tssr157795 19 5911630 to 5911637 7 - TSS region transcription start site region 157795
Cpgi10487 19 5912027 to 5912963 936 CpG island CpG island 10487
Tssr157796 19 5912771 to 5912822 51 - TSS region transcription start site region 157796
Tssr157797 19 5912834 to 5912852 18 - TSS region transcription start site region 157797
Gm42067 19 5912940 to 5914831 1891 + antisense lncRNA gene predicted gene, 42067
Tssr154530 19 5912952 to 5912954 2 + TSS region transcription start site region 154530
Cdc42ep2 19 5917556 to 5924816 7260 - protein coding gene CDC42 effector protein (Rho GTPase binding) 2
Tssr157798 19 5918427 to 5918467 40 - TSS region transcription start site region 157798
Tssr157799 19 5918508 to 5918520 12 - TSS region transcription start site region 157799
Tssr157800 19 5919848 to 5919851 3 - TSS region transcription start site region 157800
Cpgi10488 19 5924020 to 5925193 1173 CpG island CpG island 10488
Tssr157801 19 5924797 to 5924823 26 - TSS region transcription start site region 157801
Tssr154531 19 5924960 to 5924996 36 + TSS region transcription start site region 154531
Tssr157802 19 5929631 to 5929644 13 - TSS region transcription start site region 157802
Tssr154532 19 5929939 to 5929953 14 + TSS region transcription start site region 154532
Tssr154533 19 5930253 to 5930296 43 + TSS region transcription start site region 154533
Pola2 19 5940543 to 5964206 23663 - protein coding gene polymerase (DNA directed), alpha 2
Tssr157803 19 5952065 to 5952075 10 - TSS region transcription start site region 157803
Tssr157804 19 5952183 to 5952220 37 - TSS region transcription start site region 157804
Tssr154534 19 5952629 to 5952640 11 + TSS region transcription start site region 154534
Tssr154535 19 5953618 to 5953632 14 + TSS region transcription start site region 154535
Tssr157805 19 5955605 to 5955609 4 - TSS region transcription start site region 157805
Cpgi10489 19 5963723 to 5964573 850 CpG island CpG island 10489
Tssr157806 19 5964132 to 5964210 78 - TSS region transcription start site region 157806
Tssr154536 19 5964267 to 5964306 39 + TSS region transcription start site region 154536
Slc22a20 19 5970234 to 5986143 15909 - protein coding gene solute carrier family 22 (organic anion transporter), member 20
Gm31719 19 5970486 to 5984846 14360 + lncRNA gene predicted gene, 31719
Capn1 19 5988546 to 6015825 27279 - protein coding gene calpain 1
Tssr157807 19 5989166 to 5989185 19 - TSS region transcription start site region 157807
Tssr157808 19 5989270 to 5989311 41 - TSS region transcription start site region 157808
Tssr157809 19 5989347 to 5989360 13 - TSS region transcription start site region 157809
Tssr157810 19 5991578 to 5991627 49 - TSS region transcription start site region 157810
Tssr5421 19 5992087 to 5992105 18 - TSS region transcription start site region 5421
Gm10814 19 6012620 to 6018426 5806 + lincRNA gene predicted gene 10814
Tssr157811 19 6015152 to 6015198 46 - TSS region transcription start site region 157811
Cpgi10490 19 6015291 to 6015954 663 CpG island CpG island 10490
Tssr157812 19 6015489 to 6015505 16 - TSS region transcription start site region 157812
Tssr157813 19 6015514 to 6015528 14 - TSS region transcription start site region 157813
Tssr157814 19 6015769 to 6015830 61 - TSS region transcription start site region 157814
Tssr157815 19 6015842 to 6015871 29 - TSS region transcription start site region 157815
Gm19505 19 6027533 to 6028401 868 - pseudogene predicted gene, 19505
Tssr154537 19 6036715 to 6036716 1 + TSS region transcription start site region 154537
Gm8034 19 6044691 to 6044822 131 - pseudogene predicted gene 8034
Tssr157816 19 6044890 to 6044901 11 - TSS region transcription start site region 157816
D530017H19Rik 19 6045059 to 6047018 1959 unclassified non-coding RNA gene RIKEN cDNA D530017H19 gene
Tssr154538 19 6046104 to 6046113 9 + TSS region transcription start site region 154538
Cpgi10491 19 6046214 to 6047733 1519 CpG island CpG island 10491
Syvn1 19 6046576 to 6053712 7136 + protein coding gene synovial apoptosis inhibitor 1, synoviolin
Tssr154539 19 6046629 to 6046645 16 + TSS region transcription start site region 154539
Tssr157817 19 6046948 to 6047031 83 - TSS region transcription start site region 157817
Tssr154540 19 6047021 to 6047041 20 + TSS region transcription start site region 154540
Tssr154541 19 6047055 to 6047080 25 + TSS region transcription start site region 154541
Tssr154542 19 6047081 to 6047103 22 + TSS region transcription start site region 154542
Tssr157818 19 6047410 to 6047424 14 - TSS region transcription start site region 157818
Tssr154543 19 6050630 to 6050653 23 + TSS region transcription start site region 154543
Mir6988 19 6051334 to 6051392 58 + miRNA gene microRNA 6988
Tssr154544 19 6051392 to 6051406 14 + TSS region transcription start site region 154544
Mrpl49 19 6053630 to 6057751 4121 - protein coding gene mitochondrial ribosomal protein L49
Cpgi10492 19 6057387 to 6058338 951 CpG island CpG island 10492
Tssr157819 19 6057736 to 6057769 33 - TSS region transcription start site region 157819
Fau 19 6057888 to 6059524 1636 + protein coding gene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
Tssr154545 19 6057892 to 6057914 22 + TSS region transcription start site region 154545
Tssr154546 19 6057925 to 6057958 33 + TSS region transcription start site region 154546
Tssr154547 19 6058134 to 6058206 72 + TSS region transcription start site region 154547
Tssr154548 19 6058210 to 6058230 20 + TSS region transcription start site region 154548
Tssr154549 19 6058235 to 6058246 11 + TSS region transcription start site region 154549
Tssr154550 19 6058321 to 6058359 38 + TSS region transcription start site region 154550
Cpgi10493 19 6060986 to 6062408 1422 CpG island CpG island 10493
Tssr154551 19 6061176 to 6061235 59 + TSS region transcription start site region 154551
Znhit2 19 6061207 to 6062468 1261 + protein coding gene zinc finger, HIT domain containing 2
Tssr154552 19 6061237 to 6061252 15 + TSS region transcription start site region 154552
Tssr154553 19 6061267 to 6061288 21 + TSS region transcription start site region 154553
Tssr154554 19 6061338 to 6061377 39 + TSS region transcription start site region 154554
Tssr154555 19 6061384 to 6061395 11 + TSS region transcription start site region 154555
Tssr154556 19 6061438 to 6061449 11 + TSS region transcription start site region 154556
Tssr154557 19 6061466 to 6061479 13 + TSS region transcription start site region 154557
Tssr154558 19 6061503 to 6061527 24 + TSS region transcription start site region 154558
Tssr154559 19 6061530 to 6061562 32 + TSS region transcription start site region 154559
Tssr157820 19 6062111 to 6062156 45 - TSS region transcription start site region 157820
Tm7sf2 19 6062821 to 6067850 5029 - protein coding gene transmembrane 7 superfamily member 2
Cpgi10494 19 6067076 to 6068323 1247 CpG island CpG island 10494
Tssr157821 19 6067795 to 6067865 70 - TSS region transcription start site region 157821
Vps51 19 6067842 to 6077187 9345 - protein coding gene VPS51 GARP complex subunit
Cpgi10495 19 6070761 to 6071034 273 CpG island CpG island 10495
Cpgi10496 19 6076845 to 6077457 612 CpG island CpG island 10496
Gm28374 19 6076945 to 6082256 5311 - protein coding gene predicted gene 28374
Tssr157822 19 6077183 to 6077229 46 - TSS region transcription start site region 157822
Tssr154560 19 6080017 to 6080028 11 + TSS region transcription start site region 154560
Tssr154561 19 6080029 to 6080042 13 + TSS region transcription start site region 154561
Tmem262 19 6080033 to 6080788 755 + protein coding gene transmembrane protein 262
Tssr157823 19 6080311 to 6080336 25 - TSS region transcription start site region 157823
Zfpl1 19 6080757 to 6084939 4182 - protein coding gene zinc finger like protein 1
Cpgi10497 19 6084327 to 6085594 1267 CpG island CpG island 10497