Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5832065-6072075

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Neat1 19 5824708 to 5845478 20770 - lincRNA gene nuclear paraspeckle assembly transcript 1 (non-protein coding)
Tssr157776 19 5834923 to 5834937 14 - TSS region transcription start site region 157776
Tssr157777 19 5841327 to 5841347 20 - TSS region transcription start site region 157777
Tssr157778 19 5841881 to 5841884 3 - TSS region transcription start site region 157778
Tssr154512 19 5842299 to 5842311 12 + TSS region transcription start site region 154512
Cpgi10483 19 5843925 to 5844357 432 CpG island CpG island 10483
Gm27533 19 5844286 to 5844437 151 - unclassified non-coding RNA gene predicted gene, 27533
Gm27505 19 5844638 to 5844747 109 - unclassified non-coding RNA gene predicted gene, 27505
Gm28006 19 5844916 to 5845037 121 - unclassified non-coding RNA gene predicted gene, 28006
Tssr154513 19 5845112 to 5845140 28 + TSS region transcription start site region 154513
Tssr154514 19 5845279 to 5845362 83 + TSS region transcription start site region 154514
Tssr157779 19 5845471 to 5845485 14 - TSS region transcription start site region 157779
Cpgi10484 19 5845515 to 5846041 526 CpG island CpG island 10484
Frmd8os 19 5845657 to 5851372 5715 + antisense lncRNA gene FERM domain containing 8, opposite strand
Tssr157780 19 5845782 to 5845840 58 - TSS region transcription start site region 157780
Tssr157781 19 5846613 to 5846631 18 - TSS region transcription start site region 157781
Tssr157782 19 5846750 to 5846783 33 - TSS region transcription start site region 157782
Tssr154515 19 5846772 to 5846784 12 + TSS region transcription start site region 154515
Tssr154516 19 5846848 to 5846860 12 + TSS region transcription start site region 154516
Tssr154517 19 5846865 to 5846886 21 + TSS region transcription start site region 154517
Tssr154518 19 5846899 to 5846910 11 + TSS region transcription start site region 154518
Tssr154519 19 5846964 to 5846989 25 + TSS region transcription start site region 154519
Tssr157783 19 5848111 to 5848124 13 - TSS region transcription start site region 157783
Tssr154520 19 5848495 to 5848522 27 + TSS region transcription start site region 154520
Tssr154521 19 5848589 to 5848668 79 + TSS region transcription start site region 154521
Tssr157784 19 5849943 to 5849961 18 - TSS region transcription start site region 157784
Tssr157785 19 5850004 to 5850014 10 - TSS region transcription start site region 157785
Frmd8 19 5850974 to 5875273 24299 - protein coding gene FERM domain containing 8
Tssr157786 19 5856747 to 5856775 28 - TSS region transcription start site region 157786
Cpgi10485 19 5874751 to 5875500 749 CpG island CpG island 10485
Tssr157787 19 5874974 to 5874993 19 - TSS region transcription start site region 157787
Tssr157788 19 5875210 to 5875264 54 - TSS region transcription start site region 157788
Tssr157789 19 5875268 to 5875279 11 - TSS region transcription start site region 157789
Tssr154522 19 5877794 to 5877840 46 + TSS region transcription start site region 154522
Slc25a45 19 5877808 to 5885766 7958 + protein coding gene solute carrier family 25, member 45
Tssr154523 19 5877853 to 5877870 17 + TSS region transcription start site region 154523
Tssr154524 19 5877874 to 5877885 11 + TSS region transcription start site region 154524
Tssr154525 19 5877899 to 5877914 15 + TSS region transcription start site region 154525
Tssr154526 19 5878132 to 5878162 30 + TSS region transcription start site region 154526
Tssr154527 19 5878590 to 5878611 21 + TSS region transcription start site region 154527
Tssr154528 19 5878622 to 5878644 22 + TSS region transcription start site region 154528
Tssr154529 19 5884746 to 5884792 46 + TSS region transcription start site region 154529
Tigd3 19 5891139 to 5894107 2968 - protein coding gene tigger transposable element derived 3
Cpgi10486 19 5893539 to 5894379 840 CpG island CpG island 10486
Tssr157790 19 5894070 to 5894097 27 - TSS region transcription start site region 157790
Tssr157791 19 5894100 to 5894155 55 - TSS region transcription start site region 157791
Dpf2 19 5896516 to 5912871 16355 - protein coding gene D4, zinc and double PHD fingers family 2
Tssr157792 19 5898204 to 5898216 12 - TSS region transcription start site region 157792
Tssr157793 19 5902664 to 5902694 30 - TSS region transcription start site region 157793
Tssr157794 19 5905489 to 5905525 36 - TSS region transcription start site region 157794
Tssr157795 19 5911630 to 5911637 7 - TSS region transcription start site region 157795
Cpgi10487 19 5912027 to 5912963 936 CpG island CpG island 10487
Tssr157796 19 5912771 to 5912822 51 - TSS region transcription start site region 157796
Tssr157797 19 5912834 to 5912852 18 - TSS region transcription start site region 157797
Gm42067 19 5912940 to 5914831 1891 + antisense lncRNA gene predicted gene, 42067
Tssr154530 19 5912952 to 5912954 2 + TSS region transcription start site region 154530
Cdc42ep2 19 5917556 to 5924816 7260 - protein coding gene CDC42 effector protein (Rho GTPase binding) 2
Tssr157798 19 5918427 to 5918467 40 - TSS region transcription start site region 157798
Tssr157799 19 5918508 to 5918520 12 - TSS region transcription start site region 157799
Tssr157800 19 5919848 to 5919851 3 - TSS region transcription start site region 157800
Cpgi10488 19 5924020 to 5925193 1173 CpG island CpG island 10488
Tssr157801 19 5924797 to 5924823 26 - TSS region transcription start site region 157801
Tssr154531 19 5924960 to 5924996 36 + TSS region transcription start site region 154531
Tssr157802 19 5929631 to 5929644 13 - TSS region transcription start site region 157802
Tssr154532 19 5929939 to 5929953 14 + TSS region transcription start site region 154532
Tssr154533 19 5930253 to 5930296 43 + TSS region transcription start site region 154533
Pola2 19 5940543 to 5964206 23663 - protein coding gene polymerase (DNA directed), alpha 2
Tssr157803 19 5952065 to 5952075 10 - TSS region transcription start site region 157803
Tssr157804 19 5952183 to 5952220 37 - TSS region transcription start site region 157804
Tssr154534 19 5952629 to 5952640 11 + TSS region transcription start site region 154534
Tssr154535 19 5953618 to 5953632 14 + TSS region transcription start site region 154535
Tssr157805 19 5955605 to 5955609 4 - TSS region transcription start site region 157805
Cpgi10489 19 5963723 to 5964573 850 CpG island CpG island 10489
Tssr157806 19 5964132 to 5964210 78 - TSS region transcription start site region 157806
Tssr154536 19 5964267 to 5964306 39 + TSS region transcription start site region 154536
Slc22a20 19 5970234 to 5986143 15909 - protein coding gene solute carrier family 22 (organic anion transporter), member 20
Gm31719 19 5970486 to 5984846 14360 + lncRNA gene predicted gene, 31719
Capn1 19 5988546 to 6015825 27279 - protein coding gene calpain 1
Tssr157807 19 5989166 to 5989185 19 - TSS region transcription start site region 157807
Tssr157808 19 5989270 to 5989311 41 - TSS region transcription start site region 157808
Tssr157809 19 5989347 to 5989360 13 - TSS region transcription start site region 157809
Tssr157810 19 5991578 to 5991627 49 - TSS region transcription start site region 157810
Tssr5421 19 5992087 to 5992105 18 - TSS region transcription start site region 5421
Gm10814 19 6012620 to 6018426 5806 + lincRNA gene predicted gene 10814
Tssr157811 19 6015152 to 6015198 46 - TSS region transcription start site region 157811
Cpgi10490 19 6015291 to 6015954 663 CpG island CpG island 10490
Tssr157812 19 6015489 to 6015505 16 - TSS region transcription start site region 157812
Tssr157813 19 6015514 to 6015528 14 - TSS region transcription start site region 157813
Tssr157814 19 6015769 to 6015830 61 - TSS region transcription start site region 157814
Tssr157815 19 6015842 to 6015871 29 - TSS region transcription start site region 157815
Gm19505 19 6027533 to 6028401 868 - pseudogene predicted gene, 19505
Tssr154537 19 6036715 to 6036716 1 + TSS region transcription start site region 154537
Gm8034 19 6044691 to 6044822 131 - pseudogene predicted gene 8034
Tssr157816 19 6044890 to 6044901 11 - TSS region transcription start site region 157816
D530017H19Rik 19 6045059 to 6047018 1959 unclassified non-coding RNA gene RIKEN cDNA D530017H19 gene
Tssr154538 19 6046104 to 6046113 9 + TSS region transcription start site region 154538
Cpgi10491 19 6046214 to 6047733 1519 CpG island CpG island 10491
Syvn1 19 6046576 to 6053712 7136 + protein coding gene synovial apoptosis inhibitor 1, synoviolin
Tssr154539 19 6046629 to 6046645 16 + TSS region transcription start site region 154539
Tssr157817 19 6046948 to 6047031 83 - TSS region transcription start site region 157817
Tssr154540 19 6047021 to 6047041 20 + TSS region transcription start site region 154540
Tssr154541 19 6047055 to 6047080 25 + TSS region transcription start site region 154541
Tssr154542 19 6047081 to 6047103 22 + TSS region transcription start site region 154542
Tssr157818 19 6047410 to 6047424 14 - TSS region transcription start site region 157818
Tssr154543 19 6050630 to 6050653 23 + TSS region transcription start site region 154543
Mir6988 19 6051334 to 6051392 58 + miRNA gene microRNA 6988
Tssr154544 19 6051392 to 6051406 14 + TSS region transcription start site region 154544
Mrpl49 19 6053630 to 6057751 4121 - protein coding gene mitochondrial ribosomal protein L49
Cpgi10492 19 6057387 to 6058338 951 CpG island CpG island 10492
Tssr157819 19 6057736 to 6057769 33 - TSS region transcription start site region 157819
Fau 19 6057888 to 6059524 1636 + protein coding gene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)
Tssr154545 19 6057892 to 6057914 22 + TSS region transcription start site region 154545
Tssr154546 19 6057925 to 6057958 33 + TSS region transcription start site region 154546
Tssr154547 19 6058134 to 6058206 72 + TSS region transcription start site region 154547
Tssr154548 19 6058210 to 6058230 20 + TSS region transcription start site region 154548
Tssr154549 19 6058235 to 6058246 11 + TSS region transcription start site region 154549
Tssr154550 19 6058321 to 6058359 38 + TSS region transcription start site region 154550
Cpgi10493 19 6060986 to 6062408 1422 CpG island CpG island 10493
Tssr154551 19 6061176 to 6061235 59 + TSS region transcription start site region 154551
Znhit2 19 6061207 to 6062468 1261 + protein coding gene zinc finger, HIT domain containing 2
Tssr154552 19 6061237 to 6061252 15 + TSS region transcription start site region 154552
Tssr154553 19 6061267 to 6061288 21 + TSS region transcription start site region 154553
Tssr154554 19 6061338 to 6061377 39 + TSS region transcription start site region 154554
Tssr154555 19 6061384 to 6061395 11 + TSS region transcription start site region 154555
Tssr154556 19 6061438 to 6061449 11 + TSS region transcription start site region 154556
Tssr154557 19 6061466 to 6061479 13 + TSS region transcription start site region 154557
Tssr154558 19 6061503 to 6061527 24 + TSS region transcription start site region 154558
Tssr154559 19 6061530 to 6061562 32 + TSS region transcription start site region 154559
Tssr157820 19 6062111 to 6062156 45 - TSS region transcription start site region 157820
Tm7sf2 19 6062821 to 6067850 5029 - protein coding gene transmembrane 7 superfamily member 2
Cpgi10494 19 6067076 to 6068323 1247 CpG island CpG island 10494
Tssr157821 19 6067795 to 6067865 70 - TSS region transcription start site region 157821
Vps51 19 6067842 to 6077187 9345 - protein coding gene VPS51 GARP complex subunit
Cpgi10495 19 6070761 to 6071034 273 CpG island CpG island 10495