Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5405900-5465965

51 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr154412	19	5406089 to 5406093	4	+	TSS region	transcription start site region 154412
Tssr157588	19	5406601 to 5406606	5	-	TSS region	transcription start site region 157588
Tssr5410	19	5406796 to 5406836	40	+	TSS region	transcription start site region 5410
4930481A15Rik	19	5406815 to 5422847	16032	+	antisense lncRNA gene	RIKEN cDNA 4930481A15 gene
Tssr154413	19	5406864 to 5406880	16	+	TSS region	transcription start site region 154413
Tssr157589	19	5408432 to 5408468	36	-	TSS region	transcription start site region 157589
Tssr154414	19	5414888 to 5414912	24	+	TSS region	transcription start site region 154414
Tssr154415	19	5414974 to 5414978	4	+	TSS region	transcription start site region 154415
Gm6293	19	5415565 to 5415759	194	-	pseudogene	predicted pseudogene 6293
Cpgi10446	19	5415636 to 5415867	231		CpG island	CpG island 10446
Tssr157590	19	5415789 to 5415793	4	-	TSS region	transcription start site region 157590
Drap1	19	5422805 to 5424979	2174	-	protein coding gene	Dr1 associated protein 1 (negative cofactor 2 alpha)
Tssr157591	19	5423800 to 5423821	21	-	TSS region	transcription start site region 157591
Tssr157592	19	5424089 to 5424106	17	-	TSS region	transcription start site region 157592
Cpgi10447	19	5424107 to 5425751	1644		CpG island	CpG island 10447
Tssr157593	19	5424250 to 5424287	37	-	TSS region	transcription start site region 157593
Tssr157594	19	5424468 to 5424565	97	-	TSS region	transcription start site region 157594
Tssr157595	19	5424768 to 5424811	43	-	TSS region	transcription start site region 157595
Tssr157596	19	5424822 to 5424845	23	-	TSS region	transcription start site region 157596
Tssr157597	19	5424878 to 5424890	12	-	TSS region	transcription start site region 157597
Tssr157598	19	5424906 to 5425026	120	-	TSS region	transcription start site region 157598
Tssr154416	19	5425023 to 5425037	14	+	TSS region	transcription start site region 154416
Tssr157599	19	5425035 to 5425046	11	-	TSS region	transcription start site region 157599
Tssr154417	19	5425121 to 5425173	52	+	TSS region	transcription start site region 154417
AI837181	19	5425157 to 5427313	2156	+	protein coding gene	expressed sequence AI837181
Tssr154418	19	5425237 to 5425248	11	+	TSS region	transcription start site region 154418
Tssr157600	19	5425367 to 5425388	21	-	TSS region	transcription start site region 157600
Gm25432	19	5435900 to 5435965	65	+	snoRNA gene	predicted gene, 25432
Gm31070	19	5439246 to 5439521	275	-	pseudogene	predicted gene, 31070
Cpgi10448	19	5447302 to 5448973	1671		CpG island	CpG island 10448
Tssr154419	19	5447692 to 5447711	19	+	TSS region	transcription start site region 154419
Fosl1	19	5447698 to 5455938	8240	+	protein coding gene	fos-like antigen 1
Tssr5411	19	5447724 to 5447729	5	+	TSS region	transcription start site region 5411
Tssr157601	19	5447770 to 5447773	3	-	TSS region	transcription start site region 157601
Tssr154420	19	5447859 to 5447866	7	+	TSS region	transcription start site region 154420
Tssr154421	19	5447886 to 5447905	19	+	TSS region	transcription start site region 154421
Tssr154422	19	5450233 to 5450282	49	+	TSS region	transcription start site region 154422
Tssr154423	19	5454423 to 5454429	6	+	TSS region	transcription start site region 154423
Tssr154424	19	5455049 to 5455068	19	+	TSS region	transcription start site region 154424
Tssr154425	19	5455590 to 5455612	22	+	TSS region	transcription start site region 154425
Cpgi10449	19	5456356 to 5457758	1402		CpG island	CpG island 10449
Ccdc85b	19	5456789 to 5457397	608	-	protein coding gene	coiled-coil domain containing 85B
Tssr157602	19	5457488 to 5457494	6	-	TSS region	transcription start site region 157602
Tssr157603	19	5457504 to 5457573	69	-	TSS region	transcription start site region 157603
Cpgi10450	19	5460496 to 5461213	717		CpG island	CpG island 10450
Tssr154426	19	5460608 to 5460638	30	+	TSS region	transcription start site region 154426
Fibp	19	5460616 to 5465051	4435	+	protein coding gene	fibroblast growth factor (acidic) intracellular binding protein
Tssr154427	19	5460648 to 5460655	7	+	TSS region	transcription start site region 154427
Tssr5412	19	5460659 to 5460666	7	+	TSS region	transcription start site region 5412
Tssr154428	19	5464057 to 5464108	51	+	TSS region	transcription start site region 154428
Ctsw	19	5465240 to 5468498	3258	-	protein coding gene	cathepsin W