Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5336089-5476093

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Catsper1 19 5335741 to 5344153 8412 + protein coding gene cation channel, sperm associated 1
Cst6 19 5344705 to 5349574 4869 - protein coding gene cystatin E/M
Cpgi10443 19 5349104 to 5349507 403 CpG island CpG island 10443
Tssr157571 19 5349340 to 5349358 18 - TSS region transcription start site region 157571
Banf1 19 5364641 to 5366645 2004 - protein coding gene barrier to autointegration factor 1
Tssr157572 19 5364802 to 5364825 23 - TSS region transcription start site region 157572
Tssr157573 19 5364859 to 5364878 19 - TSS region transcription start site region 157573
Tssr157574 19 5364893 to 5364918 25 - TSS region transcription start site region 157574
Cpgi10444 19 5365701 to 5367695 1994 CpG island CpG island 10444
Tssr157575 19 5366253 to 5366264 11 - TSS region transcription start site region 157575
Tssr157576 19 5366269 to 5366280 11 - TSS region transcription start site region 157576
Tssr157577 19 5366285 to 5366378 93 - TSS region transcription start site region 157577
Tssr154405 19 5366387 to 5366421 34 + TSS region transcription start site region 154405
Tssr157578 19 5366598 to 5366611 13 - TSS region transcription start site region 157578
Tssr157579 19 5366626 to 5366663 37 - TSS region transcription start site region 157579
Tssr154406 19 5366764 to 5366851 87 + TSS region transcription start site region 154406
Eif1ad 19 5366813 to 5371511 4698 + protein coding gene eukaryotic translation initiation factor 1A domain containing
Tssr154407 19 5366948 to 5366962 14 + TSS region transcription start site region 154407
Tssr154408 19 5366965 to 5367037 72 + TSS region transcription start site region 154408
Sart1 19 5377523 to 5388703 11180 - protein coding gene squamous cell carcinoma antigen recognized by T cells 1
Cpgi10445 19 5387749 to 5389130 1381 CpG island CpG island 10445
D330050I16Rik 19 5388336 to 5390069 1733 + lncRNA gene RIKEN cDNA D330050I16 gene
Tssr157580 19 5388629 to 5388641 12 - TSS region transcription start site region 157580
Tssr157581 19 5388656 to 5388691 35 - TSS region transcription start site region 157581
Tssr157582 19 5388726 to 5388735 9 - TSS region transcription start site region 157582
Tssr154409 19 5388814 to 5388831 17 + TSS region transcription start site region 154409
Tssr154410 19 5388838 to 5388885 47 + TSS region transcription start site region 154410
Tssr157583 19 5389924 to 5389942 18 - TSS region transcription start site region 157583
Tsga10ip 19 5390049 to 5394401 4352 - protein coding gene testis specific 10 interacting protein
Tssr157584 19 5394335 to 5394383 48 - TSS region transcription start site region 157584
Tssr157585 19 5394385 to 5394402 17 - TSS region transcription start site region 157585
Tssr154411 19 5394632 to 5394637 5 + TSS region transcription start site region 154411
Tssr157586 19 5402460 to 5402484 24 - TSS region transcription start site region 157586
Tssr157587 19 5402493 to 5402528 35 - TSS region transcription start site region 157587
Tssr154412 19 5406089 to 5406093 4 + TSS region transcription start site region 154412
Tssr157588 19 5406601 to 5406606 5 - TSS region transcription start site region 157588
Tssr5410 19 5406796 to 5406836 40 + TSS region transcription start site region 5410
4930481A15Rik 19 5406815 to 5422847 16032 + antisense lncRNA gene RIKEN cDNA 4930481A15 gene
Tssr154413 19 5406864 to 5406880 16 + TSS region transcription start site region 154413
Tssr157589 19 5408432 to 5408468 36 - TSS region transcription start site region 157589
Tssr154414 19 5414888 to 5414912 24 + TSS region transcription start site region 154414
Tssr154415 19 5414974 to 5414978 4 + TSS region transcription start site region 154415
Gm6293 19 5415565 to 5415759 194 - pseudogene predicted pseudogene 6293
Cpgi10446 19 5415636 to 5415867 231 CpG island CpG island 10446
Tssr157590 19 5415789 to 5415793 4 - TSS region transcription start site region 157590
Drap1 19 5422805 to 5424979 2174 - protein coding gene Dr1 associated protein 1 (negative cofactor 2 alpha)
Tssr157591 19 5423800 to 5423821 21 - TSS region transcription start site region 157591
Tssr157592 19 5424089 to 5424106 17 - TSS region transcription start site region 157592
Cpgi10447 19 5424107 to 5425751 1644 CpG island CpG island 10447
Tssr157593 19 5424250 to 5424287 37 - TSS region transcription start site region 157593
Tssr157594 19 5424468 to 5424565 97 - TSS region transcription start site region 157594
Tssr157595 19 5424768 to 5424811 43 - TSS region transcription start site region 157595
Tssr157596 19 5424822 to 5424845 23 - TSS region transcription start site region 157596
Tssr157597 19 5424878 to 5424890 12 - TSS region transcription start site region 157597
Tssr157598 19 5424906 to 5425026 120 - TSS region transcription start site region 157598
Tssr154416 19 5425023 to 5425037 14 + TSS region transcription start site region 154416
Tssr157599 19 5425035 to 5425046 11 - TSS region transcription start site region 157599
Tssr154417 19 5425121 to 5425173 52 + TSS region transcription start site region 154417
AI837181 19 5425157 to 5427313 2156 + protein coding gene expressed sequence AI837181
Tssr154418 19 5425237 to 5425248 11 + TSS region transcription start site region 154418
Tssr157600 19 5425367 to 5425388 21 - TSS region transcription start site region 157600
Gm25432 19 5435900 to 5435965 65 + snoRNA gene predicted gene, 25432
Gm31070 19 5439246 to 5439521 275 - pseudogene predicted gene, 31070
Cpgi10448 19 5447302 to 5448973 1671 CpG island CpG island 10448
Tssr154419 19 5447692 to 5447711 19 + TSS region transcription start site region 154419
Fosl1 19 5447698 to 5455938 8240 + protein coding gene fos-like antigen 1
Tssr5411 19 5447724 to 5447729 5 + TSS region transcription start site region 5411
Tssr157601 19 5447770 to 5447773 3 - TSS region transcription start site region 157601
Tssr154420 19 5447859 to 5447866 7 + TSS region transcription start site region 154420
Tssr154421 19 5447886 to 5447905 19 + TSS region transcription start site region 154421
Tssr154422 19 5450233 to 5450282 49 + TSS region transcription start site region 154422
Tssr154423 19 5454423 to 5454429 6 + TSS region transcription start site region 154423
Tssr154424 19 5455049 to 5455068 19 + TSS region transcription start site region 154424
Tssr154425 19 5455590 to 5455612 22 + TSS region transcription start site region 154425
Cpgi10449 19 5456356 to 5457758 1402 CpG island CpG island 10449
Ccdc85b 19 5456789 to 5457397 608 - protein coding gene coiled-coil domain containing 85B
Tssr157602 19 5457488 to 5457494 6 - TSS region transcription start site region 157602
Tssr157603 19 5457504 to 5457573 69 - TSS region transcription start site region 157603
Cpgi10450 19 5460496 to 5461213 717 CpG island CpG island 10450
Tssr154426 19 5460608 to 5460638 30 + TSS region transcription start site region 154426
Fibp 19 5460616 to 5465051 4435 + protein coding gene fibroblast growth factor (acidic) intracellular binding protein
Tssr154427 19 5460648 to 5460655 7 + TSS region transcription start site region 154427
Tssr5412 19 5460659 to 5460666 7 + TSS region transcription start site region 5412
Tssr154428 19 5464057 to 5464108 51 + TSS region transcription start site region 154428
Ctsw 19 5465240 to 5468498 3258 - protein coding gene cathepsin W
Tssr157604 19 5468487 to 5468506 19 - TSS region transcription start site region 157604
Cpgi10451 19 5473728 to 5474018 290 CpG island CpG island 10451
Efemp2 19 5473973 to 5481853 7880 + protein coding gene epidermal growth factor-containing fibulin-like extracellular matrix protein 2
Cpgi10452 19 5474319 to 5475456 1137 CpG island CpG island 10452
Tssr154429 19 5474617 to 5474644 27 + TSS region transcription start site region 154429
Tssr154430 19 5474681 to 5474775 94 + TSS region transcription start site region 154430
Tssr154431 19 5474796 to 5474822 26 + TSS region transcription start site region 154431
Tssr154432 19 5474878 to 5474895 17 + TSS region transcription start site region 154432
Tssr154433 19 5474911 to 5474938 27 + TSS region transcription start site region 154433