Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4843844-5401127

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi10413 19 4854835 to 4855860 1025 CpG island CpG island 10413
Ctsf 19 4855129 to 4860912 5783 + protein coding gene cathepsin F
Tssr154363 19 4855147 to 4855269 122 + TSS region transcription start site region 154363
Tssr154364 19 4859222 to 4859262 40 + TSS region transcription start site region 154364
Tssr154365 19 4859373 to 4859386 13 + TSS region transcription start site region 154365
Tssr154366 19 4859409 to 4859422 13 + TSS region transcription start site region 154366
Actn3 19 4861223 to 4877909 16686 - protein coding gene actinin alpha 3
Tssr157519 19 4864020 to 4864062 42 - TSS region transcription start site region 157519
Cpgi10414 19 4865150 to 4865521 371 CpG island CpG island 10414
Cpgi10415 19 4867782 to 4868029 247 CpG island CpG island 10415
Tssr157520 19 4867988 to 4867998 10 - TSS region transcription start site region 157520
Tssr157521 19 4868028 to 4868035 7 - TSS region transcription start site region 157521
Tssr154367 19 4869386 to 4869396 10 + TSS region transcription start site region 154367
Tssr154368 19 4869399 to 4869414 15 + TSS region transcription start site region 154368
Tssr157522 19 4869405 to 4869449 44 - TSS region transcription start site region 157522
Tssr154369 19 4871076 to 4871091 15 + TSS region transcription start site region 154369
Tssr157523 19 4872349 to 4872360 11 - TSS region transcription start site region 157523
Tssr157524 19 4876870 to 4876880 10 - TSS region transcription start site region 157524
Tssr157525 19 4876916 to 4876929 13 - TSS region transcription start site region 157525
Tssr157526 19 4877882 to 4877899 17 - TSS region transcription start site region 157526
Cpgi10416 19 4878407 to 4879116 709 CpG island CpG island 10416
Zdhhc24 19 4878668 to 4885397 6729 + protein coding gene zinc finger, DHHC domain containing 24
Tssr154370 19 4878671 to 4878718 47 + TSS region transcription start site region 154370
Tssr157527 19 4879214 to 4879242 28 - TSS region transcription start site region 157527
Bbs1 19 4886898 to 4906627 19729 - protein coding gene Bardet-Biedl syndrome 1 (human)
Gm25334 19 4904673 to 4904782 109 + snRNA gene predicted gene, 25334
Tssr157528 19 4906598 to 4906632 34 - TSS region transcription start site region 157528
Dpp3 19 4907229 to 4928287 21058 - protein coding gene dipeptidylpeptidase 3
Tssr157529 19 4926955 to 4926967 12 - TSS region transcription start site region 157529
Tssr157530 19 4927313 to 4927326 13 - TSS region transcription start site region 157530
Cpgi10417 19 4927938 to 4928624 686 CpG island CpG island 10417
Tssr5408 19 4927969 to 4927997 28 - TSS region transcription start site region 5408
Tssr157531 19 4928241 to 4928259 18 - TSS region transcription start site region 157531
Peli3 19 4930651 to 4943127 12476 - protein coding gene pellino 3
Cpgi10418 19 4942380 to 4943366 986 CpG island CpG island 10418
Tssr157532 19 4943049 to 4943101 52 - TSS region transcription start site region 157532
Tssr157533 19 4961725 to 4961734 9 - TSS region transcription start site region 157533
Cpgi10419 19 4962032 to 4962615 583 CpG island CpG island 10419
Mrpl11 19 4962306 to 4966995 4689 + protein coding gene mitochondrial ribosomal protein L11
Tssr154371 19 4962308 to 4962332 24 + TSS region transcription start site region 154371
Tssr154372 19 4962334 to 4962362 28 + TSS region transcription start site region 154372
Tssr154373 19 4962369 to 4962378 9 + TSS region transcription start site region 154373
Npas4 19 4984355 to 4989971 5616 - protein coding gene neuronal PAS domain protein 4
Cpgi10420 19 4984389 to 4984796 407 CpG island CpG island 10420
Cpgi10421 19 4989512 to 4990080 568 CpG island CpG island 10421
Tssr157534 19 4989964 to 4989972 8 - TSS region transcription start site region 157534
Cpgi10422 19 4990793 to 4991016 223 CpG island CpG island 10422
Tssr157535 19 4993710 to 4993725 15 - TSS region transcription start site region 157535
Cpgi10423 19 5001654 to 5002437 783 CpG island CpG island 10423
Tssr157536 19 5001771 to 5001783 12 - TSS region transcription start site region 157536
Tssr157537 19 5001789 to 5001814 25 - TSS region transcription start site region 157537
Tssr157538 19 5001847 to 5001875 28 - TSS region transcription start site region 157538
D19Dcr1 19 5011606 to 5011701 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 1
D19Mit29 19 5011610 to 5011804 194 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 29
Gm42063 19 5017356 to 5021765 4409 - lncRNA gene predicted gene, 42063
Cpgi10424 19 5023490 to 5024668 1178 CpG island CpG island 10424
Tssr157539 19 5023926 to 5023979 53 - TSS region transcription start site region 157539
Slc29a2 19 5024006 to 5031971 7965 + protein coding gene solute carrier family 29 (nucleoside transporters), member 2
Tssr154374 19 5024042 to 5024155 113 + TSS region transcription start site region 154374
Tssr154375 19 5024162 to 5024182 20 + TSS region transcription start site region 154375
Gm30581 19 5037817 to 5038805 988 - lncRNA gene predicted gene, 30581
Cpgi10425 19 5038232 to 5039892 1660 CpG island CpG island 10425
n-TSgct6 19 5038304 to 5038385 81 - tRNA gene nuclear encoded tRNA serine 6 (anticodon GCT)
B4gat1 19 5038826 to 5041134 2308 + protein coding gene beta-1,4-glucuronyltransferase 1
Tssr154376 19 5038847 to 5038938 91 + TSS region transcription start site region 154376
Cpgi10426 19 5041111 to 5041763 652 CpG island CpG island 10426
Tssr154377 19 5041337 to 5041416 79 + TSS region transcription start site region 154377
Brms1 19 5041404 to 5049917 8513 + protein coding gene breast cancer metastasis-suppressor 1
Tssr154378 19 5041515 to 5041533 18 + TSS region transcription start site region 154378
Tssr5409 19 5050447 to 5050466 19 + TSS region transcription start site region 5409
Rin1 19 5050481 to 5057071 6590 + protein coding gene Ras and Rab interactor 1
Tssr154379 19 5050807 to 5050858 51 + TSS region transcription start site region 154379
Cpgi10427 19 5051105 to 5051320 215 CpG island CpG island 10427
Cpgi10428 19 5067751 to 5069061 1310 CpG island CpG island 10428
Tssr154380 19 5068077 to 5068085 8 + TSS region transcription start site region 154380
Cd248 19 5068078 to 5070637 2559 + protein coding gene CD248 antigen, endosialin
Tssr154381 19 5068087 to 5068098 11 + TSS region transcription start site region 154381
Tssr154382 19 5068101 to 5068115 14 + TSS region transcription start site region 154382
Tssr154383 19 5068117 to 5068122 5 + TSS region transcription start site region 154383
Tssr154384 19 5069264 to 5069286 22 + TSS region transcription start site region 154384
Tssr154385 19 5069431 to 5069446 15 + TSS region transcription start site region 154385
Tssr154386 19 5069690 to 5069705 15 + TSS region transcription start site region 154386
Tssr154387 19 5069737 to 5069753 16 + TSS region transcription start site region 154387
Tssr154388 19 5069824 to 5069835 11 + TSS region transcription start site region 154388
Gm30627 19 5070830 to 5072120 1290 - lncRNA gene predicted gene, 30627
Cpgi10429 19 5071527 to 5071768 241 CpG island CpG island 10429
Cpgi10430 19 5071918 to 5072417 499 CpG island CpG island 10430
Tssr157540 19 5072074 to 5072090 16 - TSS region transcription start site region 157540
Tssr157541 19 5072109 to 5072129 20 - TSS region transcription start site region 157541
Gm46658 19 5072130 to 5075259 3129 + lncRNA gene predicted gene, 46658
Tssr157542 19 5072497 to 5072523 26 - TSS region transcription start site region 157542
Tmem151a 19 5079337 to 5085477 6140 - protein coding gene transmembrane protein 151A
Cpgi10431 19 5081726 to 5083002 1276 CpG island CpG island 10431
D19Dcr2 19 5084596 to 5084699 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 2
Cpgi10432 19 5084832 to 5085981 1149 CpG island CpG island 10432
Tssr157543 19 5085483 to 5085501 18 - TSS region transcription start site region 157543
Cpgi10433 19 5087728 to 5089033 1305 CpG island CpG island 10433
Tssr154389 19 5088534 to 5088575 41 + TSS region transcription start site region 154389
Yif1a 19 5088538 to 5092879 4341 + protein coding gene Yip1 interacting factor homolog A (S. cerevisiae)
Tssr154390 19 5088580 to 5088591 11 + TSS region transcription start site region 154390
Tssr154391 19 5088648 to 5088655 7 + TSS region transcription start site region 154391
Cnih2 19 5092871 to 5098418 5547 - protein coding gene cornichon family AMPA receptor auxiliary protein 2
Tssr157544 19 5093003 to 5093016 13 - TSS region transcription start site region 157544
Tssr157545 19 5093248 to 5093266 18 - TSS region transcription start site region 157545
Cpgi10434 19 5094209 to 5094751 542 CpG island CpG island 10434
Tssr157546 19 5094597 to 5094624 27 - TSS region transcription start site region 157546
Cpgi10435 19 5097951 to 5099066 1115 CpG island CpG island 10435
Tssr157547 19 5098251 to 5098275 24 - TSS region transcription start site region 157547
Tssr157548 19 5098460 to 5098559 99 - TSS region transcription start site region 157548
Rab1b 19 5099207 to 5106996 7789 - protein coding gene RAB1B, member RAS oncogene family
Tssr157549 19 5099505 to 5099525 20 - TSS region transcription start site region 157549
Tssr157550 19 5099676 to 5099701 25 - TSS region transcription start site region 157550
Cpgi10436 19 5106570 to 5107226 656 CpG island CpG island 10436
Tssr157551 19 5106967 to 5107023 56 - TSS region transcription start site region 157551
Tssr157552 19 5107027 to 5107038 11 - TSS region transcription start site region 157552
Klc2 19 5107746 to 5118560 10814 - protein coding gene kinesin light chain 2
Tssr154392 19 5111320 to 5111334 14 + TSS region transcription start site region 154392
Cpgi10437 19 5117082 to 5118710 1628 CpG island CpG island 10437
Gm10817 19 5118037 to 5119299 1262 unclassified gene predicted gene 10817
Tssr157553 19 5118224 to 5118322 98 - TSS region transcription start site region 157553
Tssr157554 19 5118345 to 5118358 13 - TSS region transcription start site region 157554
Tssr157555 19 5118372 to 5118390 18 - TSS region transcription start site region 157555
Gm30840 19 5118844 to 5126127 7283 + lncRNA gene predicted gene, 30840
Gm5242 19 5131740 to 5132972 1232 - pseudogene predicted gene 5242
Pacs1 19 5133688 to 5273119 139431 - protein coding gene phosphofurin acidic cluster sorting protein 1
Tssr157556 19 5134361 to 5134366 5 - TSS region transcription start site region 157556
Tssr157557 19 5158599 to 5158603 4 - TSS region transcription start site region 157557
Gm27468 19 5201198 to 5201303 105 - miRNA gene predicted gene, 27468
Tssr157558 19 5205804 to 5205813 9 - TSS region transcription start site region 157558
D430030G11Rik 19 5212479 to 5215044 2565 unclassified non-coding RNA gene RIKEN cDNA D430030G11 gene
D19Dcr3 19 5222811 to 5222908 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 3
Cpgi10438 19 5272247 to 5273585 1338 CpG island CpG island 10438
Tssr157559 19 5272892 to 5272901 9 - TSS region transcription start site region 157559
Tssr157560 19 5272982 to 5273000 18 - TSS region transcription start site region 157560
Tssr157561 19 5273007 to 5273037 30 - TSS region transcription start site region 157561
Tssr157562 19 5273068 to 5273079 11 - TSS region transcription start site region 157562
Tssr157563 19 5273080 to 5273129 49 - TSS region transcription start site region 157563
Tssr157564 19 5273265 to 5273290 25 - TSS region transcription start site region 157564
Sf3b2 19 5273923 to 5295455 21532 - protein coding gene splicing factor 3b, subunit 2
Tssr154393 19 5286803 to 5286822 19 + TSS region transcription start site region 154393
Tssr154394 19 5286880 to 5286924 44 + TSS region transcription start site region 154394
Tssr157565 19 5293188 to 5293198 10 - TSS region transcription start site region 157565
Tssr157566 19 5293275 to 5293289 14 - TSS region transcription start site region 157566
Cpgi10439 19 5295030 to 5295853 823 CpG island CpG island 10439
Tssr157567 19 5295397 to 5295430 33 - TSS region transcription start site region 157567
Tssr154395 19 5298276 to 5298287 11 + TSS region transcription start site region 154395
Tssr154396 19 5298302 to 5298357 55 + TSS region transcription start site region 154396
Cpgi10440 19 5298303 to 5298516 213 CpG island CpG island 10440
Gal3st3 19 5298331 to 5308738 10407 + protein coding gene galactose-3-O-sulfotransferase 3
Tssr154397 19 5298364 to 5298367 3 + TSS region transcription start site region 154397
Tssr157568 19 5302500 to 5302502 2 - TSS region transcription start site region 157568
Gm42064 19 5305873 to 5306997 1124 - lncRNA gene predicted gene, 42064
Cpgi10441 19 5306679 to 5308221 1542 CpG island CpG island 10441
Tssr157569 19 5307071 to 5307114 43 - TSS region transcription start site region 157569
Tssr157570 19 5307508 to 5307528 20 - TSS region transcription start site region 157570
Tssr154398 19 5308252 to 5308272 20 + TSS region transcription start site region 154398
Tssr154399 19 5308302 to 5308313 11 + TSS region transcription start site region 154399
Tssr154400 19 5308367 to 5308371 4 + TSS region transcription start site region 154400
Nstr1 19 5321112 to 5321310 198 QTL nerve sheath tumor resistance QTL 1
D19Mit59 19 5321112 to 5321310 198 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 59
Cpgi10442 19 5323944 to 5324095 151 CpG island CpG island 10442
Gm7074 19 5324333 to 5325253 920 + pseudogene predicted gene 7074
Tssr154401 19 5328000 to 5328017 17 + TSS region transcription start site region 154401
Tssr154402 19 5328049 to 5328061 12 + TSS region transcription start site region 154402
Tssr154403 19 5335619 to 5335630 11 + TSS region transcription start site region 154403
Tssr154404 19 5335644 to 5335651 7 + TSS region transcription start site region 154404
Catsper1 19 5335741 to 5344153 8412 + protein coding gene cation channel, sperm associated 1
Cst6 19 5344705 to 5349574 4869 - protein coding gene cystatin E/M
Cpgi10443 19 5349104 to 5349507 403 CpG island CpG island 10443
Tssr157571 19 5349340 to 5349358 18 - TSS region transcription start site region 157571
Banf1 19 5364641 to 5366645 2004 - protein coding gene barrier to autointegration factor 1
Tssr157572 19 5364802 to 5364825 23 - TSS region transcription start site region 157572
Tssr157573 19 5364859 to 5364878 19 - TSS region transcription start site region 157573
Tssr157574 19 5364893 to 5364918 25 - TSS region transcription start site region 157574
Cpgi10444 19 5365701 to 5367695 1994 CpG island CpG island 10444
Tssr157575 19 5366253 to 5366264 11 - TSS region transcription start site region 157575
Tssr157576 19 5366269 to 5366280 11 - TSS region transcription start site region 157576
Tssr157577 19 5366285 to 5366378 93 - TSS region transcription start site region 157577
Tssr154405 19 5366387 to 5366421 34 + TSS region transcription start site region 154405
Tssr157578 19 5366598 to 5366611 13 - TSS region transcription start site region 157578
Tssr157579 19 5366626 to 5366663 37 - TSS region transcription start site region 157579
Tssr154406 19 5366764 to 5366851 87 + TSS region transcription start site region 154406
Eif1ad 19 5366813 to 5371511 4698 + protein coding gene eukaryotic translation initiation factor 1A domain containing
Tssr154407 19 5366948 to 5366962 14 + TSS region transcription start site region 154407
Tssr154408 19 5366965 to 5367037 72 + TSS region transcription start site region 154408
Sart1 19 5377523 to 5388703 11180 - protein coding gene squamous cell carcinoma antigen recognized by T cells 1
Cpgi10445 19 5387749 to 5389130 1381 CpG island CpG island 10445
D330050I16Rik 19 5388336 to 5390069 1733 + lncRNA gene RIKEN cDNA D330050I16 gene
Tssr157580 19 5388629 to 5388641 12 - TSS region transcription start site region 157580
Tssr157581 19 5388656 to 5388691 35 - TSS region transcription start site region 157581
Tssr157582 19 5388726 to 5388735 9 - TSS region transcription start site region 157582
Tssr154409 19 5388814 to 5388831 17 + TSS region transcription start site region 154409
Tssr154410 19 5388838 to 5388885 47 + TSS region transcription start site region 154410
Tssr157583 19 5389924 to 5389942 18 - TSS region transcription start site region 157583
Tsga10ip 19 5390049 to 5394401 4352 - protein coding gene testis specific 10 interacting protein
Tssr157584 19 5394335 to 5394383 48 - TSS region transcription start site region 157584
Tssr157585 19 5394385 to 5394402 17 - TSS region transcription start site region 157585
Tssr154411 19 5394632 to 5394637 5 + TSS region transcription start site region 154411