Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4605569-5006634

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcx 19 4510472 to 4621752 111280 + protein coding gene pyruvate carboxylase
Tssr154334 19 4609920 to 4609940 20 + TSS region transcription start site region 154334
Lrfn4 19 4611785 to 4615667 3882 - protein coding gene leucine rich repeat and fibronectin type III domain containing 4
Cpgi10403 19 4614279 to 4616070 1791 CpG island CpG island 10403
Tssr157502 19 4615145 to 4615199 54 - TSS region transcription start site region 157502
Tssr157503 19 4615453 to 4615512 59 - TSS region transcription start site region 157503
Tssr157504 19 4615518 to 4615539 21 - TSS region transcription start site region 157504
Tssr157505 19 4615647 to 4615700 53 - TSS region transcription start site region 157505
Tssr154335 19 4618432 to 4618449 17 + TSS region transcription start site region 154335
Tssr154336 19 4621135 to 4621148 13 + TSS region transcription start site region 154336
Rce1 19 4622591 to 4625641 3050 - protein coding gene Ras converting CAAX endopeptidase 1
Mir6986 19 4623898 to 4623955 57 - miRNA gene microRNA 6986
Cpgi10404 19 4625016 to 4626186 1170 CpG island CpG island 10404
Tssr157506 19 4625084 to 4625123 39 - TSS region transcription start site region 157506
Tssr157507 19 4625272 to 4625321 49 - TSS region transcription start site region 157507
Tssr157508 19 4625323 to 4625361 38 - TSS region transcription start site region 157508
9030625N01Rik 19 4625394 to 4629856 4462 unclassified non-coding RNA gene RIKEN cDNA 9030625N01 gene
Tssr157509 19 4625612 to 4625658 46 - TSS region transcription start site region 157509
Gm960 19 4625734 to 4698668 72934 - protein coding gene predicted gene 960
Cpgi10405 19 4697962 to 4698715 753 CpG island CpG island 10405
Tssr154337 19 4711153 to 4711258 105 + TSS region transcription start site region 154337
Sptbn2 19 4711223 to 4752359 41136 + protein coding gene spectrin beta, non-erythrocytic 2
Tssr154338 19 4711259 to 4711270 11 + TSS region transcription start site region 154338
Tssr154339 19 4711276 to 4711287 11 + TSS region transcription start site region 154339
Tssr154340 19 4711345 to 4711354 9 + TSS region transcription start site region 154340
Tssr154341 19 4711358 to 4711361 3 + TSS region transcription start site region 154341
Tssr154342 19 4711366 to 4711381 15 + TSS region transcription start site region 154342
Tssr154343 19 4711393 to 4711414 21 + TSS region transcription start site region 154343
Tssr154344 19 4711427 to 4711438 11 + TSS region transcription start site region 154344
Cpgi10406 19 4711497 to 4712947 1450 CpG island CpG island 10406
Gm42061 19 4711651 to 4720886 9235 - protein coding gene predicted gene, 42061
Tssr154345 19 4711954 to 4711982 28 + TSS region transcription start site region 154345
Tssr154346 19 4711995 to 4712008 13 + TSS region transcription start site region 154346
Tssr154347 19 4712071 to 4712111 40 + TSS region transcription start site region 154347
Tssr154348 19 4712118 to 4712173 55 + TSS region transcription start site region 154348
Tssr154349 19 4712204 to 4712218 14 + TSS region transcription start site region 154349
Tssr154350 19 4721060 to 4721165 105 + TSS region transcription start site region 154350
Tssr154351 19 4721184 to 4721195 11 + TSS region transcription start site region 154351
Tssr154352 19 4721215 to 4721225 10 + TSS region transcription start site region 154352
Tssr154353 19 4721276 to 4721283 7 + TSS region transcription start site region 154353
Tssr154354 19 4731148 to 4731154 6 + TSS region transcription start site region 154354
Cpgi10407 19 4745795 to 4745955 160 CpG island CpG island 10407
Cpgi10408 19 4756176 to 4757057 881 CpG island CpG island 10408
Tssr154355 19 4756436 to 4756443 7 + TSS region transcription start site region 154355
Tssr154356 19 4756463 to 4756476 13 + TSS region transcription start site region 154356
Tssr154357 19 4756488 to 4756497 9 + TSS region transcription start site region 154357
Tssr154358 19 4756527 to 4756556 29 + TSS region transcription start site region 154358
Rbm4b 19 4756543 to 4767065 10522 + protein coding gene RNA binding motif protein 4B
Tssr154359 19 4756557 to 4756623 66 + TSS region transcription start site region 154359
Tssr154360 19 4756831 to 4756869 38 + TSS region transcription start site region 154360
Tssr157510 19 4759215 to 4759217 2 - TSS region transcription start site region 157510
Gm37206 19 4762103 to 4765171 3068 - unclassified gene predicted gene, 37206
Tssr157511 19 4774069 to 4774070 1 - TSS region transcription start site region 157511
Gm19103 19 4778072 to 4778697 625 + pseudogene predicted gene, 19103
Gm21992 19 4784293 to 4811634 27341 - protein coding gene predicted gene 21992
Rbm4 19 4784293 to 4793901 9608 - protein coding gene RNA binding motif protein 4
Cpgi10409 19 4793611 to 4794385 774 CpG island CpG island 10409
Tssr157512 19 4793854 to 4793905 51 - TSS region transcription start site region 157512
5430440L12Rik 19 4794719 to 4795955 1236 unclassified gene RIKEN cDNA 5430440L12 gene
Rbm14 19 4800569 to 4811634 11065 - protein coding gene RNA binding motif protein 14
Tssr157513 19 4801356 to 4801370 14 - TSS region transcription start site region 157513
Gm21844 19 4801512 to 4805784 4272 + antisense lncRNA gene predicted gene, 21844
Cpgi10410 19 4802568 to 4802847 279 CpG island CpG island 10410
Tssr157514 19 4802605 to 4802625 20 - TSS region transcription start site region 157514
Cpgi10411 19 4810652 to 4812018 1366 CpG island CpG island 10411
Tssr157515 19 4811589 to 4811619 30 - TSS region transcription start site region 157515
Tssr154361 19 4811836 to 4811864 28 + TSS region transcription start site region 154361
Ccs 19 4825366 to 4839322 13956 - protein coding gene copper chaperone for superoxide dismutase
Tssr157516 19 4828636 to 4828642 6 - TSS region transcription start site region 157516
Cpgi10412 19 4839048 to 4839986 938 CpG island CpG island 10412
Tssr157517 19 4839256 to 4839278 22 - TSS region transcription start site region 157517
Tssr157518 19 4839286 to 4839338 52 - TSS region transcription start site region 157518
Ccdc87 19 4839366 to 4842528 3162 + protein coding gene coiled-coil domain containing 87
Tssr154362 19 4839409 to 4839482 73 + TSS region transcription start site region 154362
Cpgi10413 19 4854835 to 4855860 1025 CpG island CpG island 10413
Ctsf 19 4855129 to 4860912 5783 + protein coding gene cathepsin F
Tssr154363 19 4855147 to 4855269 122 + TSS region transcription start site region 154363
Tssr154364 19 4859222 to 4859262 40 + TSS region transcription start site region 154364
Tssr154365 19 4859373 to 4859386 13 + TSS region transcription start site region 154365
Tssr154366 19 4859409 to 4859422 13 + TSS region transcription start site region 154366
Actn3 19 4861223 to 4877909 16686 - protein coding gene actinin alpha 3
Tssr157519 19 4864020 to 4864062 42 - TSS region transcription start site region 157519
Cpgi10414 19 4865150 to 4865521 371 CpG island CpG island 10414
Cpgi10415 19 4867782 to 4868029 247 CpG island CpG island 10415
Tssr157520 19 4867988 to 4867998 10 - TSS region transcription start site region 157520
Tssr157521 19 4868028 to 4868035 7 - TSS region transcription start site region 157521
Tssr154367 19 4869386 to 4869396 10 + TSS region transcription start site region 154367
Tssr154368 19 4869399 to 4869414 15 + TSS region transcription start site region 154368
Tssr157522 19 4869405 to 4869449 44 - TSS region transcription start site region 157522
Tssr154369 19 4871076 to 4871091 15 + TSS region transcription start site region 154369
Tssr157523 19 4872349 to 4872360 11 - TSS region transcription start site region 157523
Tssr157524 19 4876870 to 4876880 10 - TSS region transcription start site region 157524
Tssr157525 19 4876916 to 4876929 13 - TSS region transcription start site region 157525
Tssr157526 19 4877882 to 4877899 17 - TSS region transcription start site region 157526
Cpgi10416 19 4878407 to 4879116 709 CpG island CpG island 10416
Zdhhc24 19 4878668 to 4885397 6729 + protein coding gene zinc finger, DHHC domain containing 24
Tssr154370 19 4878671 to 4878718 47 + TSS region transcription start site region 154370
Tssr157527 19 4879214 to 4879242 28 - TSS region transcription start site region 157527
Bbs1 19 4886898 to 4906627 19729 - protein coding gene Bardet-Biedl syndrome 1 (human)
Gm25334 19 4904673 to 4904782 109 + snRNA gene predicted gene, 25334
Tssr157528 19 4906598 to 4906632 34 - TSS region transcription start site region 157528
Dpp3 19 4907229 to 4928287 21058 - protein coding gene dipeptidylpeptidase 3
Tssr157529 19 4926955 to 4926967 12 - TSS region transcription start site region 157529
Tssr157530 19 4927313 to 4927326 13 - TSS region transcription start site region 157530
Cpgi10417 19 4927938 to 4928624 686 CpG island CpG island 10417
Tssr5408 19 4927969 to 4927997 28 - TSS region transcription start site region 5408
Tssr157531 19 4928241 to 4928259 18 - TSS region transcription start site region 157531
Peli3 19 4930651 to 4943127 12476 - protein coding gene pellino 3
Cpgi10418 19 4942380 to 4943366 986 CpG island CpG island 10418
Tssr157532 19 4943049 to 4943101 52 - TSS region transcription start site region 157532
Tssr157533 19 4961725 to 4961734 9 - TSS region transcription start site region 157533
Cpgi10419 19 4962032 to 4962615 583 CpG island CpG island 10419
Mrpl11 19 4962306 to 4966995 4689 + protein coding gene mitochondrial ribosomal protein L11
Tssr154371 19 4962308 to 4962332 24 + TSS region transcription start site region 154371
Tssr154372 19 4962334 to 4962362 28 + TSS region transcription start site region 154372
Tssr154373 19 4962369 to 4962378 9 + TSS region transcription start site region 154373
Npas4 19 4984355 to 4989971 5616 - protein coding gene neuronal PAS domain protein 4
Cpgi10420 19 4984389 to 4984796 407 CpG island CpG island 10420
Cpgi10421 19 4989512 to 4990080 568 CpG island CpG island 10421
Tssr157534 19 4989964 to 4989972 8 - TSS region transcription start site region 157534
Cpgi10422 19 4990793 to 4991016 223 CpG island CpG island 10422
Tssr157535 19 4993710 to 4993725 15 - TSS region transcription start site region 157535
Cpgi10423 19 5001654 to 5002437 783 CpG island CpG island 10423
Tssr157536 19 5001771 to 5001783 12 - TSS region transcription start site region 157536
Tssr157537 19 5001789 to 5001814 25 - TSS region transcription start site region 157537
Tssr157538 19 5001847 to 5001875 28 - TSS region transcription start site region 157538