Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:44773539-45063553

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pax2 19 44756045 to 44837871 81826 + protein coding gene paired box 2
Gm20395 19 44773762 to 44784512 10750 - antisense lncRNA gene predicted gene 20395
Mir6405 19 44808406 to 44808529 123 + miRNA gene microRNA 6405
Tssr156629 19 44825234 to 44825238 4 + TSS region transcription start site region 156629
1700039E22Rik 19 44828493 to 44835938 7445 - antisense lncRNA gene RIKEN cDNA 1700039E22 gene
Cpgi10916 19 44835333 to 44836932 1599 CpG island CpG island 10916
Tssr156630 19 44837341 to 44837345 4 + TSS region transcription start site region 156630
Gm5246 19 44851009 to 44851976 967 + pseudogene predicted gene 5246
D19Mit27 19 44852997 to 44853171 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 27
Cpgi10917 19 44867683 to 44867867 184 CpG island CpG island 10917
D19Mit24 19 44872204 to 44872359 155 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 24
Cpgi10918 19 44882073 to 44883060 987 CpG island CpG island 10918
Cpgi10919 19 44893525 to 44893834 309 CpG island CpG island 10919
Cpgi10920 19 44900324 to 44900735 411 CpG island CpG island 10920
Tssr5530 19 44918432 to 44918467 35 + TSS region transcription start site region 5530
Tssr156631 19 44918501 to 44918516 15 + TSS region transcription start site region 156631
Tssr156632 19 44918539 to 44918553 14 + TSS region transcription start site region 156632
Cpgi10921 19 44930750 to 44931661 911 CpG island CpG island 10921
Slf2 19 44931119 to 44983787 52668 + protein coding gene SMC5-SMC6 complex localization factor 2
Tssr156633 19 44931154 to 44931172 18 + TSS region transcription start site region 156633
Tssr156634 19 44935431 to 44935465 34 + TSS region transcription start site region 156634
Gm25482 19 44945022 to 44945128 106 + snRNA gene predicted gene, 25482
Tssr156635 19 44954742 to 44954746 4 + TSS region transcription start site region 156635
Tssr156636 19 44956996 to 44957000 4 + TSS region transcription start site region 156636
Tssr156637 19 44957395 to 44957399 4 + TSS region transcription start site region 156637
4930414N06Rik 19 44972117 to 44984550 12433 - lncRNA gene RIKEN cDNA 4930414N06 gene
Tssr159541 19 44984525 to 44984548 23 - TSS region transcription start site region 159541
Tssr156638 19 44988366 to 44988376 10 + TSS region transcription start site region 156638
Tssr156639 19 44988924 to 44988942 18 + TSS region transcription start site region 156639
Cpgi10922 19 44988937 to 44989808 871 CpG island CpG island 10922
Tssr156640 19 44989073 to 44989100 27 + TSS region transcription start site region 156640
Sema4g 19 44989101 to 45003397 14296 + protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Tssr156641 19 44989242 to 44989318 76 + TSS region transcription start site region 156641
Tssr156642 19 44989319 to 44989330 11 + TSS region transcription start site region 156642
Tssr156643 19 44990060 to 44990092 32 + TSS region transcription start site region 156643
Tssr156644 19 44992127 to 44992129 2 + TSS region transcription start site region 156644
Tssr156645 19 44992325 to 44992344 19 + TSS region transcription start site region 156645
Tssr156646 19 44992431 to 44992456 25 + TSS region transcription start site region 156646
Tssr156647 19 45002041 to 45002062 21 + TSS region transcription start site region 156647
Mrpl43 19 45005014 to 45006442 1428 - protein coding gene mitochondrial ribosomal protein L43
Tssr156648 19 45005656 to 45005684 28 + TSS region transcription start site region 156648
Cpgi10923 19 45005682 to 45007358 1676 CpG island CpG island 10923
Tssr159542 19 45006111 to 45006122 11 - TSS region transcription start site region 159542
Tssr159543 19 45006385 to 45006450 65 - TSS region transcription start site region 159543
Tssr156649 19 45006475 to 45006524 49 + TSS region transcription start site region 156649
Twnk 19 45006558 to 45012762 6204 + protein coding gene twinkle mtDNA helicase
Tssr156650 19 45006622 to 45006668 46 + TSS region transcription start site region 156650
Tssr156651 19 45014995 to 45015006 11 + TSS region transcription start site region 156651
Tssr156652 19 45015168 to 45015187 19 + TSS region transcription start site region 156652
Cpgi10924 19 45015176 to 45015928 752 CpG island CpG island 10924
Lzts2 19 45015176 to 45027104 11928 + protein coding gene leucine zipper, putative tumor suppressor 2
Tssr156653 19 45015198 to 45015224 26 + TSS region transcription start site region 156653
Tssr156654 19 45015232 to 45015248 16 + TSS region transcription start site region 156654
D19Dcr34 19 45015459 to 45015554 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 34
Tssr156655 19 45016937 to 45016942 5 + TSS region transcription start site region 156655
Tssr156656 19 45017429 to 45017485 56 + TSS region transcription start site region 156656
Cpgi10925 19 45017480 to 45018626 1146 CpG island CpG island 10925
Tssr5531 19 45017632 to 45017674 42 + TSS region transcription start site region 5531
Tssr156657 19 45017689 to 45017702 13 + TSS region transcription start site region 156657
Tssr156658 19 45018051 to 45018063 12 + TSS region transcription start site region 156658
Tssr156659 19 45018114 to 45018153 39 + TSS region transcription start site region 156659
Tssr156660 19 45018154 to 45018197 43 + TSS region transcription start site region 156660
Cpgi10926 19 45024120 to 45024305 185 CpG island CpG island 10926
Cpgi10927 19 45024689 to 45025065 376 CpG island CpG island 10927
Cpgi10928 19 45026074 to 45026343 269 CpG island CpG island 10928
Pdzd7 19 45026906 to 45046614 19708 - protein coding gene PDZ domain containing 7
Cpgi10929 19 45028849 to 45029232 383 CpG island CpG island 10929
9430030N17Rik 19 45030403 to 45031131 728 unclassified gene RIKEN cDNA 9430030N17 gene
Cpgi10930 19 45036712 to 45037148 436 CpG island CpG island 10930
Cpgi10931 19 45039539 to 45040808 1269 CpG island CpG island 10931
Cpgi10932 19 45046315 to 45047973 1658 CpG island CpG island 10932
Tssr159544 19 45046618 to 45046645 27 - TSS region transcription start site region 159544
Tssr156661 19 45047557 to 45047572 15 + TSS region transcription start site region 156661
Sfxn3 19 45047576 to 45056383 8807 + protein coding gene sideroflexin 3
Tssr156662 19 45047598 to 45047670 72 + TSS region transcription start site region 156662
Tssr156663 19 45047781 to 45047838 57 + TSS region transcription start site region 156663
Tssr156664 19 45047845 to 45047873 28 + TSS region transcription start site region 156664
Tssr156665 19 45055294 to 45055308 14 + TSS region transcription start site region 156665
Tssr156666 19 45055359 to 45055373 14 + TSS region transcription start site region 156666
Tssr156667 19 45055563 to 45055575 12 + TSS region transcription start site region 156667
Tssr156668 19 45055703 to 45055735 32 + TSS region transcription start site region 156668
Cpgi10933 19 45058236 to 45058837 601 CpG island CpG island 10933
Tssr5532 19 45058274 to 45058287 13 - TSS region transcription start site region 5532
Tssr5533 19 45058308 to 45058333 25 - TSS region transcription start site region 5533
Tssr156669 19 45058695 to 45058750 55 + TSS region transcription start site region 156669
Gm35782 19 45060632 to 45075109 14477 - lncRNA gene predicted gene, 35782