Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4310498-4710508

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdm2a 19 4316144 to 4398596 82452 - protein coding gene lysine (K)-specific demethylase 2A
Tssr157482 19 4318695 to 4318710 15 - TSS region transcription start site region 157482
Tssr157483 19 4321553 to 4321563 10 - TSS region transcription start site region 157483
Tssr157484 19 4333194 to 4333200 6 - TSS region transcription start site region 157484
Cpgi10398 19 4333803 to 4334072 269 CpG island CpG island 10398
Tssr157485 19 4333840 to 4333972 132 - TSS region transcription start site region 157485
Tssr157486 19 4334016 to 4334031 15 - TSS region transcription start site region 157486
Tssr157487 19 4377360 to 4377364 4 - TSS region transcription start site region 157487
Tssr157488 19 4388198 to 4388203 5 - TSS region transcription start site region 157488
Tssr157489 19 4394643 to 4394647 4 - TSS region transcription start site region 157489
Cpgi10399 19 4396445 to 4398710 2265 CpG island CpG island 10399
Tssr154317 19 4396484 to 4396497 13 + TSS region transcription start site region 154317
Tssr157490 19 4397052 to 4397098 46 - TSS region transcription start site region 157490
9430078G10Rik 19 4397713 to 4399820 2107 unclassified gene RIKEN cDNA 9430078G10 gene
Rhod 19 4425457 to 4439424 13967 - protein coding gene ras homolog family member D
Cpgi10400 19 4438907 to 4439883 976 CpG island CpG island 10400
A930001C03Rik 19 4439323 to 4448325 9002 + lncRNA gene RIKEN cDNA A930001C03 gene
Tssr157491 19 4439369 to 4439386 17 - TSS region transcription start site region 157491
Tssr157492 19 4439388 to 4439450 62 - TSS region transcription start site region 157492
Tssr154318 19 4439511 to 4439539 28 + TSS region transcription start site region 154318
Tssr157493 19 4440398 to 4440409 11 - TSS region transcription start site region 157493
Tssr157494 19 4440447 to 4440458 11 - TSS region transcription start site region 157494
Syt12 19 4445908 to 4477143 31235 - protein coding gene synaptotagmin XII
Cpgi10401 19 4476248 to 4477511 1263 CpG island CpG island 10401
Tssr157495 19 4477119 to 4477161 42 - TSS region transcription start site region 157495
Tssr157496 19 4477567 to 4477592 25 - TSS region transcription start site region 157496
2010003K11Rik 19 4496790 to 4498583 1793 - protein coding gene RIKEN cDNA 2010003K11 gene
Tssr157497 19 4498399 to 4498410 11 - TSS region transcription start site region 157497
Tssr157498 19 4498532 to 4498543 11 - TSS region transcription start site region 157498
Tssr157499 19 4498547 to 4498572 25 - TSS region transcription start site region 157499
Tssr157500 19 4498574 to 4498596 22 - TSS region transcription start site region 157500
Tssr157501 19 4498603 to 4498614 11 - TSS region transcription start site region 157501
Cpgi10402 19 4509839 to 4511261 1422 CpG island CpG island 10402
Pcx 19 4510472 to 4621752 111280 + protein coding gene pyruvate carboxylase
Tssr154319 19 4510480 to 4510487 7 + TSS region transcription start site region 154319
Tssr154320 19 4510498 to 4510508 10 + TSS region transcription start site region 154320
Tssr154321 19 4510510 to 4510532 22 + TSS region transcription start site region 154321
Tssr154322 19 4510536 to 4510552 16 + TSS region transcription start site region 154322
Tssr154323 19 4517781 to 4517811 30 + TSS region transcription start site region 154323
Tssr154324 19 4558007 to 4558011 4 + TSS region transcription start site region 154324
Tssr154325 19 4558808 to 4558816 8 + TSS region transcription start site region 154325
Tssr154326 19 4594312 to 4594332 20 + TSS region transcription start site region 154326
Tssr154327 19 4594337 to 4594361 24 + TSS region transcription start site region 154327
Tssr154328 19 4594363 to 4594394 31 + TSS region transcription start site region 154328
Tssr154329 19 4594398 to 4594422 24 + TSS region transcription start site region 154329
Tssr5407 19 4601665 to 4601681 16 + TSS region transcription start site region 5407
Tssr154330 19 4603074 to 4603079 5 + TSS region transcription start site region 154330
Tssr154331 19 4603090 to 4603102 12 + TSS region transcription start site region 154331
Tssr154332 19 4603126 to 4603145 19 + TSS region transcription start site region 154332
Tssr154333 19 4604533 to 4604541 8 + TSS region transcription start site region 154333
Tssr154334 19 4609920 to 4609940 20 + TSS region transcription start site region 154334
Lrfn4 19 4611785 to 4615667 3882 - protein coding gene leucine rich repeat and fibronectin type III domain containing 4
Cpgi10403 19 4614279 to 4616070 1791 CpG island CpG island 10403
Tssr157502 19 4615145 to 4615199 54 - TSS region transcription start site region 157502
Tssr157503 19 4615453 to 4615512 59 - TSS region transcription start site region 157503
Tssr157504 19 4615518 to 4615539 21 - TSS region transcription start site region 157504
Tssr157505 19 4615647 to 4615700 53 - TSS region transcription start site region 157505
Tssr154335 19 4618432 to 4618449 17 + TSS region transcription start site region 154335
Tssr154336 19 4621135 to 4621148 13 + TSS region transcription start site region 154336
Rce1 19 4622591 to 4625641 3050 - protein coding gene Ras converting CAAX endopeptidase 1
Mir6986 19 4623898 to 4623955 57 - miRNA gene microRNA 6986
Cpgi10404 19 4625016 to 4626186 1170 CpG island CpG island 10404
Tssr157506 19 4625084 to 4625123 39 - TSS region transcription start site region 157506
Tssr157507 19 4625272 to 4625321 49 - TSS region transcription start site region 157507
Tssr157508 19 4625323 to 4625361 38 - TSS region transcription start site region 157508
9030625N01Rik 19 4625394 to 4629856 4462 unclassified non-coding RNA gene RIKEN cDNA 9030625N01 gene
Tssr157509 19 4625612 to 4625658 46 - TSS region transcription start site region 157509
Gm960 19 4625734 to 4698668 72934 - protein coding gene predicted gene 960
Cpgi10405 19 4697962 to 4698715 753 CpG island CpG island 10405